| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0841 |
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| Symbol | lysS |
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| ID | 5612992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1001438 |
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| End bp | 1002940 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931689 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001472580 |
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| Protein GI | 157373980 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGAAC AAGTACAAGA TGAGAATAAA TTAATTGCAG AGCGACGTGC CAAGCTTGAG
CACATTCGTG AAAACTGCCC TGCAAATGGT CACCCGAATA CCTTCGATCG TAAACACAAA
GCGGCAGACA TTCAGGCTGA ATTTGGTAAT AACACCAAAG AAGAGCTTGA AGGCATGGGC
ATTGTGCGCA GTATCGCTGG CCGTGTCATG GCAAAGCGTG GTCCTTTCCT GGTCATTCAA
GATGTCAGTG GACGCATTCA GGCCTATGCC GGAAAAGATG TTCAAAAAGA TCTTAAAGCT
AAGTTCCAGG GCTTAGATAT TGGTGACATT ATCGGCGTGA CTGGTCAGCT TCACCTGTCG
GGTAAAGGCG ATCTTTATGT GAACATGGAA GAGTATGAGT TGCTGACAAA GGCGCTACGT
CCATTGCCTG AAAAGTTCCA CGGTCTAACT GACCAGGAGA CGCGTTACCG TCAGCGTTAC
ATCGATCTGA TCGTTAATGA AGAGTCTCGT GAAGCCTTCA TAATGCGCTC AAAGGTGGTT
TCTGCTATTC GTAACTTCAT GGTTAAGAAA GAGTTCATGG AAGTTGAAAC GCCTATGATG
CACACCATTC CTGGTGGCGC TTCGGCTCGT CCGTTTGAAA CGCATCACAA TGCACTCGAT
ATCGCTATGT ATCTTCGAAT TGCACCAGAG CTTTACCTTA AACGTCTTGT TGTTGGCGGC
TTCGAGCGTG TGTTCGAAAT TAACCGTAAC TTCCGTAACG AAGGTTTGTC GCCACGCCAT
AACCCAGAGT TCACTATGAT GGAATTCTAT ATGGCGTATT CAGATTATAA AGATCTGATG
GATCTTACCG AAGAGATGCT AAGTTCTATT GCCACCGAAC TGTGTGGTTC TCCAAAACTG
CCATACGGTG AGCATGTTGT TGACTTTGGT GGTCCATATG CACGTTTAAG CATGTTGGAT
GCAATCAAGA AGTACAACCC GGACAACGCC ACTATTCAGT CTATGACTTA CGAAGAAGTG
AAAGACGTTG AATTTATGCG TAACCTGGCT AAGAGCCTGG GCATGACTAT CGAGAAGTTC
TGGACCTGTG GTCAGCTTCT TGAAGAGATC TTCGGTGAAA CCGCTGAGAC TCAGCTTATG
CAGCCTACCT TTATTACCGG TTACCCTGCG GATATCTCAC CGCTTGCACG TCGTAATGAC
GATAACCATT TCATCACTGA CCGTTTCGAG TTTTTCATCG GCGGCCGTGA AGTCGCTAAT
GGTTTCTCTG AGCTCAACGA TGCAGAAGAT CAAGACAACC GCTTCAAGGC ACAGGTCGAT
GCAAAAGATG CCGGTGATGA TGAAGCTATG TTCTATGATG CAGATTACAT TACTGCGCTA
GAGCACGGTC TACCACCAAC TGCGGGTCAA GGTATCGGAA TCGATCGTCT GGTGATGTTA
TTTACGAACA CTCACACGAT TCGTGACGTG ATCCTGTTCC CGGCTATGCG TCCTCAGGGG
TAG
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| Protein sequence | MTEQVQDENK LIAERRAKLE HIRENCPANG HPNTFDRKHK AADIQAEFGN NTKEELEGMG
IVRSIAGRVM AKRGPFLVIQ DVSGRIQAYA GKDVQKDLKA KFQGLDIGDI IGVTGQLHLS
GKGDLYVNME EYELLTKALR PLPEKFHGLT DQETRYRQRY IDLIVNEESR EAFIMRSKVV
SAIRNFMVKK EFMEVETPMM HTIPGGASAR PFETHHNALD IAMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYSDYKDLM DLTEEMLSSI ATELCGSPKL
PYGEHVVDFG GPYARLSMLD AIKKYNPDNA TIQSMTYEEV KDVEFMRNLA KSLGMTIEKF
WTCGQLLEEI FGETAETQLM QPTFITGYPA DISPLARRND DNHFITDRFE FFIGGREVAN
GFSELNDAED QDNRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQG
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