| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0831 |
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| Symbol | |
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| ID | 5612457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 986648 |
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| End bp | 987703 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931679 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001472570 |
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| Protein GI | 157373970 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCGG CTTTGATATC ACTTTTCTTA GCCACAGTCT TCTTAGTGAA TATGCTTATG
CAACCCTCTC CAATGCTCAG CATACGAGAG ACTAGTGTTT TGCTTTCGCC TGTTGTGGTT
GTTGCCTTAA TCGGTACTGC GGTGAGCTGG ATTTTTAAGG GTATCGAAAT CTCAAATAGG
GGGCTGAACA TCTATCTATT CATGTTAGAA GCGGCCTGGA TATTTGTGAT CTGGCAACTG
TTTTATACTG GGGGGGAGAT GTATGCAGGA CACGCCTCGT TGACAGGTGT TGAGGCATTA
GTAGACGTTT TAGTGCTGAC TTTTGCGATC GCACTATTTC CCGATAGAAG AGTCATGTTC
ATGGCAGTGT TGCCTCTGAT GCTATCTAGT TTCTTTATTC GGTTCATTGA AATACCTGCA
AACCCACTGT TTCCGGTGAC GAAACTGTTT TGTATCTTGG CGATATTAGT GACGGGGCAG
AAAGTCTTGT ATTCCTGGTT CAAGAAGGCG ATCGTCCGGG ATGTGGAAAA ACAATATTTG
TTAAAGCAAT TCAGAAGGAT GGCACTGGTC GATGGTTTAA CCAATATCAG CAATCGTCGT
CATTTCGATG AGATACTGTC ACAGGAGATC AGGGCTTCAG AGAGAAACAA TCACCCTTTG
AGCCTTATCC TTATCGATAT AGATTATTTT AAACGTCTCA ATGATAGCTC TGGTCATCAG
GTGGGGGATG AATGTCTGGT TGAGGTCGCT AAGGTGCTAG CCGTTATCTG TCACCGCCCG
AGAGATCTCG CTGCCAGGTA TGGGGGGGAG GAGTTCGTGT TACTGCTTCC CGATACCGGT
TTGAGTGGTG GTTGCCAGAT TGCGAAAAAA GTCAGAGATA AACTTGCGGG CATAAAATTA
GACCACCCCG ATTCAGAGTT AGGGCATTAT ATCACCGTCT CACAGGGCGT ATGTCAATGG
CGGGAGGGGA TGAGCGCCGA TGATTTTATC TCTAAAGCCG ATACTTTACT TTATAGAGCT
AAATCAACGG GCAGGGACCG ATACGTTGAA GGTTAA
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| Protein sequence | MSAALISLFL ATVFLVNMLM QPSPMLSIRE TSVLLSPVVV VALIGTAVSW IFKGIEISNR
GLNIYLFMLE AAWIFVIWQL FYTGGEMYAG HASLTGVEAL VDVLVLTFAI ALFPDRRVMF
MAVLPLMLSS FFIRFIEIPA NPLFPVTKLF CILAILVTGQ KVLYSWFKKA IVRDVEKQYL
LKQFRRMALV DGLTNISNRR HFDEILSQEI RASERNNHPL SLILIDIDYF KRLNDSSGHQ
VGDECLVEVA KVLAVICHRP RDLAARYGGE EFVLLLPDTG LSGGCQIAKK VRDKLAGIKL
DHPDSELGHY ITVSQGVCQW REGMSADDFI SKADTLLYRA KSTGRDRYVE G
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