| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0814 |
|---|
| Symbol | |
|---|
| ID | 5611934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 965609 |
|---|
| End bp | 967906 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931662 |
|---|
| Product | peptidase S9B dipeptidylpeptidase IV subunit |
|---|
| Protein accession | YP_001472553 |
|---|
| Protein GI | 157373953 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000313146 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000639736 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAA AATGGATAAC CTCAGCTCTT ATGGCGGTGC CTATGCTTCT ATCCACCCAA
GTTATTGCAA GCCAGAATCA GCTATCTCAA GCTGAAGTCA ATCGAGGCAT AGTGACGGGT
GAGATGCTGA AAAAACTCTC GAAAGCGGGT AAATCCCCCC TGTCAATCGA GCGTATGTAT
GCCTCACCGG CGTTAGCGGG GACGAGTCCC CGAGGGCTGA AATTATCTCC CGATGGTAAA
AGGGTCACCT ATTTAGCCGG ACGTCAGGAT AATCAGCATT TTTATGACTT ATGGCAGATG
AATGTCGAAT CTGGAAAACA ATCTATCTTG CTCGATGCCG ATAAGTTAAC CATAGGTGAG
CTCTCCGATG AGGAGAAGGC GAGACGTGAA CGCCAACGAA TTTATGGCCA GGGGATCATG
GAATATTTTT GGTCTGATGA TAGTCAGGCA ATACTAATTC CAGCATCCGG TGTCCTTTAT
TACTACTCAT TGAGCGATAA CAAGGTGACA CTTCTACCTA CAGGCGATGG GTTTGCTACC
GATGCTCGCC TCTCACCCAA AGGGAAGTAT GTCTCATTCG TGCGTGATCA AAACCTATTT
GTCTTAACGT TGAAAGATAT GTCGCTGGTG GAGATGACAA CGGACGGTGG TGGCGCGATT
AAAAATGCCA TGGCCGAGTT CGTGGCACAG GAAGAGATGG ACCGCATGAC GGGCTACTGG
TGGTCGCCGG ACGAGAGCGC CATTGCCTAT ACCCGAATCG ATGAGTCTGA TGTTGAACTG
GTTACGCGTA ACGAGATCTA TGCCGATGGC ATCAAGCTGA CCGAGCAACG TTACCCATAT
GCCGGTAAGA ACAACGTTAA AATCTCATTA GGCATCGTAA AACTTACCAG CAAAAAAGTC
AGTTGGGTCG AGCTTGGAAA AGAGCAGGAT ATCTACCTGC CCAGGGTGAA ATGGTTACCC
GATAGTAAAC GCCTCTCATA TCAGTGGCAA AGCCGTGATC AGCAGGTACT CGATCTTCGA
CTGGTTGATA TCGAACGAAC CGACACGTCT AAAAATCTGG TCGAAGAGCG AAGTGATGCC
TGGGTAAATC TCAACAATGA TCTGCACTTC CTGAAGCAGC AGGAGAGCTT TATCTGGGCC
TCAGAGCGTA ATGGTTTTAA TCATCTTTAT CTTATTAATT TAGATGGCGA AGTGAAGAAG
CAGCTGACAT CGGGCGGCTG GGTTGTCGAT GGTGTTGAGT TTGTCGACGA GAAAGGGGGT
TGGATCTATT TCACCGGCCG TAAAGATACC GCCGTTGAAC AACATCTCTA TCGTGTAGCC
CTAACGGGTG GCGAAATTGA AGGTGTGAGT CAACGCCGCG GCATGCACTC ACCGGTTTTC
GCCGAGAAAG AGGCTGTATA TCTGGATTAT TTCAGCTCTC TGATGCAGCC TCCTCAAGTC
AGTTTACACG GCGATAAGGG CCAACATCTT GCTTGGGTTG AACAGAATAA GCTGGATTCG
ACTCACCCAC TCAATGAGTA TCTGGGATTG TGGCAGGTGC CTGAATTCGG GCAGGTTAAG
GCCGAAGATG GTCAATCACT TCAGTATCGC CTGTTTAAAC CGATAAACTT CAATAAAGAT
AAGCAGTACC CTGTCGTAGT ACGTGTCTAT GGCGGCCCAC ACGCGCAGCT GGTCGTGAAC
AGTTGGAGCG AACATGATTA CTTTACTCAG TACCTGCTTC AGCAAGGTTT TATGGTATTC
CAGCTCGATA ACCGTGGCTC GGCTCACCGC GGAACCCGGT TTGAACATGT TATCTACAAA
CATCTGGGTG AGGCGGAAGT TAACGATCAA AAAGCTGGTG TGGACTACTT AAGAACGCTG
CCCTATGTGG ATGGTGATAA TATCGCGCTT TATGGACATA GCTACGGTGG TTACATGGCT
CTGATGGGGT TATTTAAGGC TCCGGATTAT TTTAAGGCGG CAATCTCTGG TGCGCCGGTG
ACCGACTGGG CGCTTTATGA CACCCATTAT ACCGAGCGCT ACCTTGGCCA TCCTGAAAAG
AATGCTAAGG GCTATGAAGC CAGTAGTGTG CTTCCCTATG TGAAGAATTA TCAATCGGGT
CTGTTGATGT ACCACGGCAT GGCGGATGAT AACGTGCTTT TTGAGAACAG CACTAAGGTT
TACAAGGCGC TGCAGGATGA AGGTAAGTTA TTTCAGATGA TCGATTATCC CGGCTCTAAG
CACTCGATGC GTGGTGAAAA AGTCAGAACA CATCTGTATC GCTCACTGGC AAACTTTCTG
GAAAGAGAGT TGAAGTAG
|
|---|
| Protein sequence | MTKKWITSAL MAVPMLLSTQ VIASQNQLSQ AEVNRGIVTG EMLKKLSKAG KSPLSIERMY
ASPALAGTSP RGLKLSPDGK RVTYLAGRQD NQHFYDLWQM NVESGKQSIL LDADKLTIGE
LSDEEKARRE RQRIYGQGIM EYFWSDDSQA ILIPASGVLY YYSLSDNKVT LLPTGDGFAT
DARLSPKGKY VSFVRDQNLF VLTLKDMSLV EMTTDGGGAI KNAMAEFVAQ EEMDRMTGYW
WSPDESAIAY TRIDESDVEL VTRNEIYADG IKLTEQRYPY AGKNNVKISL GIVKLTSKKV
SWVELGKEQD IYLPRVKWLP DSKRLSYQWQ SRDQQVLDLR LVDIERTDTS KNLVEERSDA
WVNLNNDLHF LKQQESFIWA SERNGFNHLY LINLDGEVKK QLTSGGWVVD GVEFVDEKGG
WIYFTGRKDT AVEQHLYRVA LTGGEIEGVS QRRGMHSPVF AEKEAVYLDY FSSLMQPPQV
SLHGDKGQHL AWVEQNKLDS THPLNEYLGL WQVPEFGQVK AEDGQSLQYR LFKPINFNKD
KQYPVVVRVY GGPHAQLVVN SWSEHDYFTQ YLLQQGFMVF QLDNRGSAHR GTRFEHVIYK
HLGEAEVNDQ KAGVDYLRTL PYVDGDNIAL YGHSYGGYMA LMGLFKAPDY FKAAISGAPV
TDWALYDTHY TERYLGHPEK NAKGYEASSV LPYVKNYQSG LLMYHGMADD NVLFENSTKV
YKALQDEGKL FQMIDYPGSK HSMRGEKVRT HLYRSLANFL ERELK
|
|---|
| |