| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0809 |
|---|
| Symbol | argD |
|---|
| ID | 5611398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 959349 |
|---|
| End bp | 960566 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931657 |
|---|
| Product | bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein |
|---|
| Protein accession | YP_001472548 |
|---|
| Protein GI | 157373948 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
|---|
| TIGRFAM ID | [TIGR00707] acetylornithine and succinylornithine aminotransferases
[TIGR03246] succinylornithine transaminase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000843342 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTAA ACAACACCCT GACAAGAGCC CAATTTGATG AAGTGATGGT GCCTAACTAT
GCGCCTTCGG CTGTAATTCC TGTTCGTGGA GAAGGTAGCC GAGTTTGGGA TCAAGAGGGT
AATGAGTTTA TCGATTTTGC CGGTGGTATA GCAGTGAACT GTTTAGGACA CTGTCATCCG
GCACTGGTTG GTGCATTGAA AGAGCAGGGT GAGAAACTAT GGCACCTTTC GAATGTGATG
ACTAATGAAC CCGCTCTTGA ACTTGCAACA AAACTGGTTA ACGCTACGTT TGCAGACCGA
GTGTACTTTG CTAACTCAGG TGCAGAGGCT AACGAAGCGG CACTTAAACT GGTTCGTCGT
TATGCTATGG ATAAGTTTGG CGTTGAGAAA GATCAAATCA TCGCTTTCGA TAAGGCGTTC
CATGGTCGTA CTTTCTTCAC AGTTAGTGTC GGTGGCCAAG CGGCATACTC AGATGGCTTC
GGTCCTAAGC CACAAAGCAT TACTCACGTA CCATTCAATG ATATTGCCGC GCTCGAAGCC
GTGATCTCAG ATAAGACTTG CGCCATTATG ATGGAGCCGC TTCAAGGTGA AGGCGGTATC
ATCGATGCTG ACCCTGAGTT CCTCAAAGCA GTTCGTGCTT TGTGTGATAA GCACAATGCC
CTGCTTGTAT TCGATGAAGT TCAAACCGGT GTTGGTCGTT TGGGTGAGTT ATATGCCTAC
ATGCGCTCAG ATGTTGTCCC TGACGTACTG ACTACGGCTA AGGCACTTGG CGGTGGATTC
CCGATAGCGG CTATGTTAAC CACTAAAGAG ATTGCCGGTC ATCTTAAGAT TGGTACTCAT
GGTTCGACCT ATGGTGGTAA TCCATTGGCG TGTGCCGTCG CTAATGCCGT ACTCGATGTG
GTTAATACTC CAGAGGTATT GGAAGGTGTT AAAGTACGTG AGCAGTTACT GCGTGATGGT
CTAAATAAGA TAAACGATAA GTATGGTGTT TTCTCTGAAG TGCGTGGTCA GGGACTACTG
CTTGGTGCTG TGCTCAATGA TAAATACCAG GGGCGTGCTA AAGAGTTCTT GGTCGCTGGT
ACTGCCGAAG GCCTAATGAG CCTAATCGCA GGGGCAAATG TCATTCGTTT CACTCCTTCA
CTGGTTATTC CTGAAGCCGA CATCGCCGAA GGTTTAGCAC GTTTTGAACG TGCTGTTGCT
AAAGTCGTAG CGGCCTAA
|
|---|
| Protein sequence | MSVNNTLTRA QFDEVMVPNY APSAVIPVRG EGSRVWDQEG NEFIDFAGGI AVNCLGHCHP
ALVGALKEQG EKLWHLSNVM TNEPALELAT KLVNATFADR VYFANSGAEA NEAALKLVRR
YAMDKFGVEK DQIIAFDKAF HGRTFFTVSV GGQAAYSDGF GPKPQSITHV PFNDIAALEA
VISDKTCAIM MEPLQGEGGI IDADPEFLKA VRALCDKHNA LLVFDEVQTG VGRLGELYAY
MRSDVVPDVL TTAKALGGGF PIAAMLTTKE IAGHLKIGTH GSTYGGNPLA CAVANAVLDV
VNTPEVLEGV KVREQLLRDG LNKINDKYGV FSEVRGQGLL LGAVLNDKYQ GRAKEFLVAG
TAEGLMSLIA GANVIRFTPS LVIPEADIAE GLARFERAVA KVVAA
|
|---|
| |