| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0807 |
|---|
| Symbol | |
|---|
| ID | 5611396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 955056 |
|---|
| End bp | 957539 |
|---|
| Gene Length | 2484 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640931655 |
|---|
| Product | peptidase S9 prolyl oligopeptidase |
|---|
| Protein accession | YP_001472546 |
|---|
| Protein GI | 157373946 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000293911 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00280594 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGAC TGATACGTAA TTCTGGTCTT AGTTTAATTG CGATAGCTAT ATTGGGTGGC
TGTGCGAGCA GTGAAAATCA TTCAGCTGTA CAAAAGCAAG ATATGCATAC TAAGGTTCAA
GCCGAACTGA CTGCACCTCC TCAGGTTGGA GAAAACTTGA CCCTGAATCA GATTATGGCT
AACCCCGACT GGATGGGAGT ACTGGCTAAG GGCGCGTATT GGGGAGATGA CAGCCAGACT
ATCTTCTTTA CGAGGCAAGC GCATGGCGCA CCAATAAAAG AATATTATCG CCAGGATGTG
GCTGCCGCTC AGGCGACACA GCTAAATTTG AACCAATTGC ATCATGCAGA TCAAGAGTCC
GGAGTCTTTG ACAAGAACAG AAGCCGAAAA GCCTACATAT ACCAGGGTAA CCTCTTCGTA
AAAGAGTTAG CTACGGGGCA GATTATTCAG CTTACGAGGC AGAATGACAA TGTAGATGGA
GTACGATTTT TAACTAATGG TGATATTGCC TTCTGGCAGG GAGACACCGT TTTTCGTATT
CATCAAGACT CGGGTATGTT TGAGCAACTG GCAAGCATCA AGATGGCTGT TAAGCCTAAA
GGCGTAGAGG CTCCGACCAG CTATATCGCC AAACAGCAAC ATAGATTGAT CCAGTATGTT
GCGATGCAGC AAGAGAATGC TAAGAAGAGA GAAGAGCATC AGAATGAACT TAGCCAGTTA
GATCCAACGC TTGCCGCTAA AGTTTGGTAC TTGGGGGATA AAGAGACGGT GTCAGACTTG
AGCCTCTCAC CCGACGGTCG TTACCTGCTC TTGTCATTAA TTGATAAGGA TTACAGTTGG
CGAAGTGAAC ATGACATCAT GCCCAATTAT CTGGGGAAAG ATGGTTATGT CGATGCCGTC
CCGGCAAGGG CTCGTGTTGC CGAAGATAAC CCACCCGGGG AGCGCTTAGT ATTACTCGAC
CTTCAAACTC ATAGTTTAAA GGATATCACT ATCGAAGGTC TTGAAGGTTT CGATGAAGAT
GTCCTGTCTG GGGTTAAGTC TGAAAATGCC AAGTTAGCGG GCGACACTTA TAAGAGTGAA
AAGTCACCTC GTAAGATCCA ACTGATGCAG GATTGGGGAT GGTCTCAAAG TGCCGTTCAA
TGGCAGGAGT CTGCCAATCG GGTCGCTATC ATGCTCGAAG CTGTCGACAA TAAAGATCGC
TGGATAGCGA CACTGGATCT AGAGAAGGGA TCCATGAAGA CCCAACACAG GCTGCATGAT
GAAGCTTGGG TTAACTATAA CTTCAATCAG TTTGGTTGGT TGCCTGAAAC TAATAACCTC
TATTATCTCT CCGAGGAAAC CGGCTATTCA CATATCTATG TTAAGCAAGC GGGTAAACAA
GCCGAGCCAC TCACACAGGG TAAATTCGTC GTAAGTGACA TCACCTTAGG TCCTAAGGCT
CAATTTATCT ACTACAAGGC TAATAAGCAG CATCCTGGTA TAGATAACGT TTATCGGGTC
TCTGTTAAAA CAGGTAAAGA TGAGCAATTA ACCCAGTGGG ATGGACAACT CGATTATACT
TTGAGCCCTG ATGGAAAAAG TCTGCTACTC AACGCGTCTC GTCGAACTGA GCCTGGAGAG
TTATTTATTC TGCCAATCGG TGGTGCTATT AAGCAACTGA CTTCATACAC CAGTGACGCC
TTTAAGAAGT ATCAGTGGCA AGCTCCTAAA GTGGTTGCTG TACCTTCGAG CCATGGCGCC
GAGGATATTT ATGCCAGAGT CTACCTCCCG CAAGGGTATG ATAAGAGTCG AGGTGAGAAG
TATCCTGCGG TGATCTTCAA CCATGGTGCA GGCTATCTGC AAAATGCTCA TTACGGCTTC
TCTGGGTACT TCAGAGAGTT TATGTTCCAT AACCTGTTAA CTCAGCAAGG TTACGTGGTT
CTGGACATGG ATTATCGCGG CTCTAAAGGC TACGGACGTG ACTGGCGTAC AGCAGTGTAT
CGCAATATGG GACACCCTGA AGTTGAGGAT TTGAAGGATG GTGTGAGCTG GATGGCCACT
CATACTAATG TTGATGCAAG TAAAGTCGGC ACCTATGGCG GTTCCTATGG GGGCTTTTTG
ACCTTTATGG CACTGTTTAC AGAGCCTGAG CTTTTCCAGG CTGGTGCCGC ACTGCGTCCT
GTGACGGATT GGGCACACTA CAATGCACCA TACACCTCAA ACATACTTAA CACTCCTGAT
GTAGATCCTA TTGCCTATGA GCGAAGCTCA CCCATAGAGC ATGCCCAGGG GCTGCAAAAA
CCACTACTCA TCATGAGTGG CGTATTAGAT GACAATGTCT TCTTCCAGGA TAGTGTTCGT
CTGGTACAGC GCTTAATTGA GTTGGAGAAG CCGATGTTCG AGACAGCAAT TTACCCGGTA
GAGCCTCACG GGTTTAAGCA ACCTTCGAGT TGGCTAGATG AATACCGTCG AATCTATAAA
CTATTTGAGC AAGAGCTGAA ATAA
|
|---|
| Protein sequence | MTGLIRNSGL SLIAIAILGG CASSENHSAV QKQDMHTKVQ AELTAPPQVG ENLTLNQIMA
NPDWMGVLAK GAYWGDDSQT IFFTRQAHGA PIKEYYRQDV AAAQATQLNL NQLHHADQES
GVFDKNRSRK AYIYQGNLFV KELATGQIIQ LTRQNDNVDG VRFLTNGDIA FWQGDTVFRI
HQDSGMFEQL ASIKMAVKPK GVEAPTSYIA KQQHRLIQYV AMQQENAKKR EEHQNELSQL
DPTLAAKVWY LGDKETVSDL SLSPDGRYLL LSLIDKDYSW RSEHDIMPNY LGKDGYVDAV
PARARVAEDN PPGERLVLLD LQTHSLKDIT IEGLEGFDED VLSGVKSENA KLAGDTYKSE
KSPRKIQLMQ DWGWSQSAVQ WQESANRVAI MLEAVDNKDR WIATLDLEKG SMKTQHRLHD
EAWVNYNFNQ FGWLPETNNL YYLSEETGYS HIYVKQAGKQ AEPLTQGKFV VSDITLGPKA
QFIYYKANKQ HPGIDNVYRV SVKTGKDEQL TQWDGQLDYT LSPDGKSLLL NASRRTEPGE
LFILPIGGAI KQLTSYTSDA FKKYQWQAPK VVAVPSSHGA EDIYARVYLP QGYDKSRGEK
YPAVIFNHGA GYLQNAHYGF SGYFREFMFH NLLTQQGYVV LDMDYRGSKG YGRDWRTAVY
RNMGHPEVED LKDGVSWMAT HTNVDASKVG TYGGSYGGFL TFMALFTEPE LFQAGAALRP
VTDWAHYNAP YTSNILNTPD VDPIAYERSS PIEHAQGLQK PLLIMSGVLD DNVFFQDSVR
LVQRLIELEK PMFETAIYPV EPHGFKQPSS WLDEYRRIYK LFEQELK
|
|---|
| |