Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0801 |
Symbol | |
ID | 5611528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 950338 |
End bp | 950928 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931649 |
Product | ubiquinol--cytochrome-c reductase |
Protein accession | YP_001472540 |
Protein GI | 157373940 |
COG category | [C] Energy production and conversion |
COG ID | [COG0723] Rieske Fe-S protein |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR01416] ubiquinol-cytochrome c reductase, iron-sulfur subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000144242 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00783232 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCAATG CGCCAGTCGA TACCGGACGT CGCAGATTTC TGACCGCAGC CACTGCCGTA GTAGGTGGTG TAGGTGCCGT CGCTGTAGCG GTTCCTTTTA TAAAGTCATG GAATCCGAGT GCCAAAGCGA AAGCTGCAGG TGCGCCGGTT GAAGTAAATA TTAGTAAAGT AGAGCCGGGT CAATTGATCC GTGTAGAATG GCGTGGAAAG CCTGTATGGG TTGTACGTCG TACTGAAGAG ATCCTGAAAA ATCTCGCCAC TCTTGATGAT CAATTACGCG ATCCAGCATC AGCAGAAGAG CAACAGCCTG CTTATGCACA AAACGCTGTT CGCTCTATCA ATCCTGAGTA CTTTATTGCC GTAGGTTTGT GTACTCACTT AGGTTGTTCT CCTACCTATC TGCCTGACAC CTTTGGTGAG CAGGTTGAGG GTGTGCCTTC CGGTTTCTTC TGCCCATGTC ATGGTTCCAA GTTTGATATG GCCGGTCGAG TATTCCAAGG GGTTCCGGCA CCATTGAACT TAGTTGTTCC ACCTCACCAG TATATCGACG ATGGCAATGT CATCATCGGT GTTGATCAGG GAGCAGTCTA A
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Protein sequence | MSNAPVDTGR RRFLTAATAV VGGVGAVAVA VPFIKSWNPS AKAKAAGAPV EVNISKVEPG QLIRVEWRGK PVWVVRRTEE ILKNLATLDD QLRDPASAEE QQPAYAQNAV RSINPEYFIA VGLCTHLGCS PTYLPDTFGE QVEGVPSGFF CPCHGSKFDM AGRVFQGVPA PLNLVVPPHQ YIDDGNVIIG VDQGAV
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