Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0799 |
Symbol | |
ID | 5611059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 947983 |
End bp | 949128 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931647 |
Product | HflK protein |
Protein accession | YP_001472538 |
Protein GI | 157373938 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01933] HflK protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.223678 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00931868 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTTGGA ACGAGCCCGG TAACAAGGGA AAAGACCCTT GGGGAAATAA AAACGGTAAC GATAAGGGAC CACCAGATCT AGATGAAGTT TTTCGTAATA TCTCGAAACG CTTTGGTGGT GGAAAAGGCA GTGGGTCAGG ACCTGGAGTC AGCTCATTTG GCCTTGTCAT TGTCTTGGGC ATCGCACTTG TAGTATGGGG GCTTTCGGGT TTCTATACCG TCAAGGAAGC AGAGAGAGGT GTTGCCTTGA GGTTCGGTGA GTACATTGGT GAAGTCGAAC CTGGCTTACA ATGGAAAGCG ACCTTCATCG ATGAAGTTTA TCCGGTGAAT GTGAGCACTG TTCGCTCAAT TCCTGCTTCT GGAAGCATGT TGACGGCTGA TGAGAATGTG GTTTTAGTTG AACTCGATGT TCAGTATCGT GTTGTTGATG CATACCGCTT CCTGTTCAGT GCTGTTGATG CTAATGCAAG TTTGCGTGAA GCAACAGACA GTGCGTTGCG TTACGTTGTC GGCCATAACA AAATGGATGA CATCTTAACG ACTGGTCGTG ATCAGATCCG CCGTGATACC TGGGAAGAGG TCGAGCGTAT TATCGAACCT TATCAGTTAG GTATTAACAT CGTTGACGTT AACTTCTTGC CTGCACGTCC ACCTGAAGAG GTGAAGGATG CATTCGATGA TGCAATTTCA GCACAGGAAG ATGAGCAGCG TTTTATTCGT GAAGCTGAGG CTTATGCCCG TGCAATTGAA CCTAAGGCTC GTGGTCAGGT TCAAAGAATG GAGCAGCAGG CTAACGCATA TAAAGAACGC GAAATATTAG AGGCGAAAGG TAAAGTTGCA AGCTTTGAAC TTTTACTTCC TCAATATACA GCTGCACCTG AAGTGACACG TGAACGACTC TATCTGGATG CTATGCAGAC AGTGTTAAAA GATACCAATA AGGTGCTGGT CGACTCAAAG AGTAGTGGCA ATATGATGTA TCTGCCTTTG GATAAGTTGA TGCAAAGCGG TCAATCTGAC ACTAAACCTC GTAAGGTTAG TTCTAATCAA TCGATGAACA CTTCAAATGA TGTTGTTGGG CAGAACAGTA TGCCGAATGA TTCACGTTCA TCTCGTAGTG ATAGAACTCG CCAGGGGAGG AATTAA
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Protein sequence | MAWNEPGNKG KDPWGNKNGN DKGPPDLDEV FRNISKRFGG GKGSGSGPGV SSFGLVIVLG IALVVWGLSG FYTVKEAERG VALRFGEYIG EVEPGLQWKA TFIDEVYPVN VSTVRSIPAS GSMLTADENV VLVELDVQYR VVDAYRFLFS AVDANASLRE ATDSALRYVV GHNKMDDILT TGRDQIRRDT WEEVERIIEP YQLGINIVDV NFLPARPPEE VKDAFDDAIS AQEDEQRFIR EAEAYARAIE PKARGQVQRM EQQANAYKER EILEAKGKVA SFELLLPQYT AAPEVTRERL YLDAMQTVLK DTNKVLVDSK SSGNMMYLPL DKLMQSGQSD TKPRKVSSNQ SMNTSNDVVG QNSMPNDSRS SRSDRTRQGR N
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