Gene Ssed_0799 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0799 
Symbol 
ID5611059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp947983 
End bp949128 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content46% 
IMG OID640931647 
ProductHflK protein 
Protein accessionYP_001472538 
Protein GI157373938 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.223678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00931868 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTTGGA ACGAGCCCGG TAACAAGGGA AAAGACCCTT GGGGAAATAA AAACGGTAAC 
GATAAGGGAC CACCAGATCT AGATGAAGTT TTTCGTAATA TCTCGAAACG CTTTGGTGGT
GGAAAAGGCA GTGGGTCAGG ACCTGGAGTC AGCTCATTTG GCCTTGTCAT TGTCTTGGGC
ATCGCACTTG TAGTATGGGG GCTTTCGGGT TTCTATACCG TCAAGGAAGC AGAGAGAGGT
GTTGCCTTGA GGTTCGGTGA GTACATTGGT GAAGTCGAAC CTGGCTTACA ATGGAAAGCG
ACCTTCATCG ATGAAGTTTA TCCGGTGAAT GTGAGCACTG TTCGCTCAAT TCCTGCTTCT
GGAAGCATGT TGACGGCTGA TGAGAATGTG GTTTTAGTTG AACTCGATGT TCAGTATCGT
GTTGTTGATG CATACCGCTT CCTGTTCAGT GCTGTTGATG CTAATGCAAG TTTGCGTGAA
GCAACAGACA GTGCGTTGCG TTACGTTGTC GGCCATAACA AAATGGATGA CATCTTAACG
ACTGGTCGTG ATCAGATCCG CCGTGATACC TGGGAAGAGG TCGAGCGTAT TATCGAACCT
TATCAGTTAG GTATTAACAT CGTTGACGTT AACTTCTTGC CTGCACGTCC ACCTGAAGAG
GTGAAGGATG CATTCGATGA TGCAATTTCA GCACAGGAAG ATGAGCAGCG TTTTATTCGT
GAAGCTGAGG CTTATGCCCG TGCAATTGAA CCTAAGGCTC GTGGTCAGGT TCAAAGAATG
GAGCAGCAGG CTAACGCATA TAAAGAACGC GAAATATTAG AGGCGAAAGG TAAAGTTGCA
AGCTTTGAAC TTTTACTTCC TCAATATACA GCTGCACCTG AAGTGACACG TGAACGACTC
TATCTGGATG CTATGCAGAC AGTGTTAAAA GATACCAATA AGGTGCTGGT CGACTCAAAG
AGTAGTGGCA ATATGATGTA TCTGCCTTTG GATAAGTTGA TGCAAAGCGG TCAATCTGAC
ACTAAACCTC GTAAGGTTAG TTCTAATCAA TCGATGAACA CTTCAAATGA TGTTGTTGGG
CAGAACAGTA TGCCGAATGA TTCACGTTCA TCTCGTAGTG ATAGAACTCG CCAGGGGAGG
AATTAA
 
Protein sequence
MAWNEPGNKG KDPWGNKNGN DKGPPDLDEV FRNISKRFGG GKGSGSGPGV SSFGLVIVLG 
IALVVWGLSG FYTVKEAERG VALRFGEYIG EVEPGLQWKA TFIDEVYPVN VSTVRSIPAS
GSMLTADENV VLVELDVQYR VVDAYRFLFS AVDANASLRE ATDSALRYVV GHNKMDDILT
TGRDQIRRDT WEEVERIIEP YQLGINIVDV NFLPARPPEE VKDAFDDAIS AQEDEQRFIR
EAEAYARAIE PKARGQVQRM EQQANAYKER EILEAKGKVA SFELLLPQYT AAPEVTRERL
YLDAMQTVLK DTNKVLVDSK SSGNMMYLPL DKLMQSGQSD TKPRKVSSNQ SMNTSNDVVG
QNSMPNDSRS SRSDRTRQGR N