| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0797 |
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| Symbol | |
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| ID | 5611057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 946340 |
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| End bp | 946621 |
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| Gene Length | 282 bp |
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| Protein Length | 93 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931645 |
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| Product | RNA chaperone Hfq |
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| Protein accession | YP_001472536 |
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| Protein GI | 157373936 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.733569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00597566 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAAAGG GGCAATCTTT ACAAGACCCG TTTTTGAACG CACTGCGCCG TGAGCGCGTT
CCTGTTTCAA TTTATCTTGT TAATGGCATT AAGTTACAAG GACAAGTTGA GTCATTTGAC
CAATTTGTTA TTTTGTTGAA AAACACGGTA AGCCAAATGG TTTACAAGCA CGCTATCTCT
ACAGTTGTGC CTGCTCGCCC ATTTAACGTT AACAGTCACA CTGCGGCACC TAGCCCTGCT
GGTGGTTTTA ATGGTCAGCA AGACGATAAC AACGACCAAT AA
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| Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS
TVVPARPFNV NSHTAAPSPA GGFNGQQDDN NDQ
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