| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0796 |
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| Symbol | miaA |
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| ID | 5611380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 945335 |
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| End bp | 946246 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931644 |
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| Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
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| Protein accession | YP_001472535 |
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| Protein GI | 157373935 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
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| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00742249 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAAAAA TCATAACGTT AATGGGGCCT ACCGCCTCAG GCAAAACGGC ATTAGCAATT
GACTTGGTTC AAAAGCACAA CTGTGAAATT ATCTCAGTCG ATTCAGCACT TATCTATCGC
TCAATGGATA TAGGTACTGC CAAACCCAGT GCCGATGAAC TTGCCCTTGC GCCTCATAGA
TTGATTGATA TACGGGATCC GGCAGAGAGT TACTCCGCAG CCGATTTCAG GGCCGATGCG
CTGCATGAAA TTGAACAGAT ACTAAAGGCT GGGAAAACAC CACTGTTAGT GGGTGGAACC
ATGATGTATT TTAAGGCTTT ATTGGAAGGG CTTTCACCAC TTCCCGCTGC CGATGAGGCT
CTCCGCGCGC AAATTATCTT AGAGGCGGAG CAGCGTGGAT GGCAAGATAT GCATGATGAG
CTTAAGCGGC TTGATCCTGT CTCATCTGAA CGCATTCATC CCAATGACCC TCAAAGGTTA
ATCAGGGCGC TGGAAGTATG CAGGATCAGT GGCAAGTCAA TGACCGAATT GAGTCAAATT
AAGTCAGAGC CTCTACCTTA TGATGTCGTT CAGTTTGCGA TATCACCAAA AGATCGAAAA
GTGTTACATA TTTCTATAGA AGAAAGATTC AAATTGATGT TAAATCAAGG TTTCGTAGAT
GAAGTTCGCG CCCTGAAAAA GCGAAGTGAC CTGAACCTAG CGCTTCCTTC GATGAGATGC
GTAGGCTATA GACAGTGCTG GCAATATCTG GATGGTGAAT TTGACTATGA TACTATGGTC
GAAAAAGCCA TAGTTGCTAC TAGGCAATTA GCCAAGCGTC AATTAACATG GTTAAGAGGC
TGGCCTGAGT TAAATTGGCT GGAAAGCGGT GTAGATTCTA ATCTAAATAC CGTATTGCGA
CATTGTCGCT AG
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| Protein sequence | MPKIITLMGP TASGKTALAI DLVQKHNCEI ISVDSALIYR SMDIGTAKPS ADELALAPHR
LIDIRDPAES YSAADFRADA LHEIEQILKA GKTPLLVGGT MMYFKALLEG LSPLPAADEA
LRAQIILEAE QRGWQDMHDE LKRLDPVSSE RIHPNDPQRL IRALEVCRIS GKSMTELSQI
KSEPLPYDVV QFAISPKDRK VLHISIEERF KLMLNQGFVD EVRALKKRSD LNLALPSMRC
VGYRQCWQYL DGEFDYDTMV EKAIVATRQL AKRQLTWLRG WPELNWLESG VDSNLNTVLR
HCR
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