Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0795 |
Symbol | mutL |
ID | 5611379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 943453 |
End bp | 945327 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931643 |
Product | DNA mismatch repair protein |
Protein accession | YP_001472534 |
Protein GI | 157373934 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0323] DNA mismatch repair enzyme (predicted ATPase) |
TIGRFAM ID | [TIGR00585] DNA mismatch repair protein MutL |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.741444 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00456525 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAATAC AGATATTACC GCCGCAACTG GCAAACCAAA TAGCGGCGGG GGAAGTTGTC GAAAGACCCG CCTCTGTGAT TAAAGAGCTG GTTGAAAATA GTCTGGATGC AGGTGCAACT CGCGTCGATA TAGAGATCGA GAAAGGCGGC AGTAAGCTGA TTAAAATTCA TGACAATGGT TCTGGGATCT CAAAAGAAGA TCTAGGCCTT GCCCTGTCTA GACATGCCAC CTCAAAACTC AGCTCTCTCG ATGATCTTGA CGCTATCCTC AGTTTCGGAT TTCGTGGTGA GGCGTTAGCG AGTATCAGCT CCGTTTCCCG GTTAACCTTA ACTTCCCGAA CGGCCGACCA GGTTGAAGCT TGGCAAGCTT ATGCCGAAGG CTCTGATATG GCGGTGAAAG TGATACCTGC CGCCCATCCG GTTGGATCGA CCGTTGAAGC CGTCGATCTG TTTTTCAATA CGCCCGCGAG AAGACGATTT CTTAAGAGTG ATAAAACCGA ATTCACGCAT ATCGATGAGT GGCTAAAACG TATTGCCTTG GTGCGTAGCG ATATTCACTT TACCTTGAAG CACAATGGCA AGGTGGTACG AAACTACCGG GCAACGAACA CCCAAGATCA ATATCTGCAA CGTTTAGCCC AGATCAGTGG GAAGAAGTTT GCTGAACAAG CGATTGAGAT CAACTGTCAA CACGATGATC TTAAGTTAAC AGGCTATGTT CAGTCTCCTT TTTTTGAAAC GCCGGCGAGC GATACTCAAT ATTTTTATGT CAATGGCAGG TTGGTACGGG ACAGGCTGGT TAATCACGCC GTCAGGCAAG CATTTGCCGA GCATGAAACC GGAGAGCAAG CAAGCTATGT ATTAATGCTT GAGCTCGATC CACATCAGGT GGATGTTAAC GTTCACCCGG CTAAACATGA AGTCAGGTTT CATCAGAGTC GTTACGTACA TGACTATATT TTTCAGGCCC TACAGTCGGC TCTTCATCAA GTCGGTAGGT TAGCAATCGA CTCTGATAAT AAGCTCGATA CCGATTCTCA TTCTCAGAGT CATGAGAGAG GGCATAGCGC TTATGGCGTT GCTGAGCCTA GCCACTCACG ACATGATTAT TCACATCAGA CTGCACCAAG CACCAAAGCA AGCACAGAAA CAAACCGTGA GCGCTTTTCT TCACCTATTT CGGCTGTGCC TTCTCACACC AGTGATGTGC AGAGCAGAGG AGGTGCGACT TCATCTTATC GACAGCAAGC TGAATTGCCC AGTGCCGCTG CGATAGCATC CTATGCAGAG TTATTAAAGA CACCGGATGT AGATCAAGGG AATAGAGGGA ATAAGGAGCT TCAAGCAAAT GTGTCAATGC CGCCAATCTT GGCGGGTCAG TATTGGGTCC TGACTCAGGA AGAGCAACTG CTGCTCCTGC CTGTTAGAAT CATTTCGACC TGGCTTTTGC AACACGAGAT CTCAAATAAA CTCGATAGTG GTCTGGTTAG CCAGCCATTA TTGATGCCGG TTTCTATCTC TATGGACGAG ACTTGGAGCG ATACGCTGGC CGAGAGGGAA TTATTGCTCA GAAAAATAGG AATTGAAGTA ACAATTCGAC TGGGGCAGTT GATTATAAAG AAAGTGCCCC CATATTTAAG ACAGAGCCAA TTAGTAGCTG TCATACCTGA TTTACTACAG TGGCTCAGGT TCGAAGAACC GAGTAATGAA GCATTGGCCT CCTGGCTTGC AAAGCATGAC GATAAGCGAT TTGAGTCTGC ACCAGATACC TGGTTAGCGT TTAGTCAGTT AGATGACAAT GTTCAAGATG AACTAATTAA GAAGGCCAAG GTTTTACCTT GGCAATCATG GCTGGAAGAA TACCCGAGTG ACTGA
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Protein sequence | MTIQILPPQL ANQIAAGEVV ERPASVIKEL VENSLDAGAT RVDIEIEKGG SKLIKIHDNG SGISKEDLGL ALSRHATSKL SSLDDLDAIL SFGFRGEALA SISSVSRLTL TSRTADQVEA WQAYAEGSDM AVKVIPAAHP VGSTVEAVDL FFNTPARRRF LKSDKTEFTH IDEWLKRIAL VRSDIHFTLK HNGKVVRNYR ATNTQDQYLQ RLAQISGKKF AEQAIEINCQ HDDLKLTGYV QSPFFETPAS DTQYFYVNGR LVRDRLVNHA VRQAFAEHET GEQASYVLML ELDPHQVDVN VHPAKHEVRF HQSRYVHDYI FQALQSALHQ VGRLAIDSDN KLDTDSHSQS HERGHSAYGV AEPSHSRHDY SHQTAPSTKA STETNRERFS SPISAVPSHT SDVQSRGGAT SSYRQQAELP SAAAIASYAE LLKTPDVDQG NRGNKELQAN VSMPPILAGQ YWVLTQEEQL LLLPVRIIST WLLQHEISNK LDSGLVSQPL LMPVSISMDE TWSDTLAERE LLLRKIGIEV TIRLGQLIIK KVPPYLRQSQ LVAVIPDLLQ WLRFEEPSNE ALASWLAKHD DKRFESAPDT WLAFSQLDDN VQDELIKKAK VLPWQSWLEE YPSD
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