Gene Ssed_0794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0794 
Symbol 
ID5611378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp942077 
End bp943399 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content44% 
IMG OID640931642 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001472533 
Protein GI157373933 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00345459 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAAGAA CTGATTTTAT TTTAAAGTTT CTATTGGTTA CATTTTCTCT TTGTGTATCT 
TTTGTTGCCC AAAGTGCTAC TAAGCTCGAT GGCGTGAGAA TATGGGCTGC TCCGGAATCG
ACTCGGGTCG TATTCGATCT GAGTAAGGCG CCCAGCTTTA CCCATTTCAC GTTAACAGGG
CCCTACCGTT TGGTCGTCGA CCTTAAGGGG ACATCGACCG CGTTGAATCT CAAGAAGCTG
GCAAACAATA GTAAAATTGT AAAAAGAGTT CGTATTAGCA AGCCTCCTTC GAAGGGAACG
CTCAGGCTGG TTATCGACCT GACTAAGCCG GTAAAATCGA GCCTGTTTGC GCTATCACCA
ACGGCGCCAT ATGGTAACCG ATTAGTCGTC GATCTTGACG ATAGCCGTTC AGTATCGGCG
GCTAAACAAA CCAGCAAACC TAAGCAAAAA CTTCGTGACG TTATTGTGGC AATCGATGCC
GGCCATGGCG GGGATGATCC CGGTTCCATA GGTCCGACGG GGATATACGA GAAAAAAGTT
GTTTTAGAGA TTGCGAAAAA AGTCGAAGCA AAGATAAATG CAACACCAGG CATGAAGGCC
ATAATGACTC GAACAGGGGA TTATTTTGTT AATCTCAATA AGCGCTCTGA AATTGCACGA
AACAGCAAAG CCGATCTATT AGTTTCTATT CACGCAGATG CATTCACCTC CTCTCAACCC
AGAGGCGCTT CAGTGTGGGT ACTCTCTATG CGTCGTGCGA ACAGTGAAAT AGGTCGATGG
CTCGAGCAAA AAGAGAAGCA TTCGGAGCTA TTAGGCGGAG CGGGTGAAAT AATTCAAAGT
ACTGACAATG AACAGTATCT GGCTATGACT TTATTAGATA TGTCTATGGA TAGATCTATG
GCTATTAGTC ATAACATTGC CGATGATGTC CTTTCCAATT TAGGCAAGGT GACCAAATTG
CATAAGCATA AACCTGAGTC CGCCAGCTTT GCAGTACTCA AATCACCCGA TATTCCATCG
ATCTTGGTTG AAACCGGCTT TATTTCGAAC CATAAAGAGG AGCGACTCCT GTCGCAAAGA
GAGCATCAAA ATAATATTGC TAAGGCGGTA CATAAAGGGG TATTACGCTA TTTTGAATCG
AATCCCCCGG TAAACTCATT ACTGGCAAGC AAAGGTTCCT TTAAGCACAA TGTCCGTAGC
GGTGAATCAT TGTCAGTGAT AGCACACAAG TATCAAGTTT CAATAAACAG TATTAAGAAG
GCCAATGGCT TGAAATCAAA TACGTTACGT ATTGGTCAAA AGTTGGTTAT ACCAAGGGCT
TAA
 
Protein sequence
MIRTDFILKF LLVTFSLCVS FVAQSATKLD GVRIWAAPES TRVVFDLSKA PSFTHFTLTG 
PYRLVVDLKG TSTALNLKKL ANNSKIVKRV RISKPPSKGT LRLVIDLTKP VKSSLFALSP
TAPYGNRLVV DLDDSRSVSA AKQTSKPKQK LRDVIVAIDA GHGGDDPGSI GPTGIYEKKV
VLEIAKKVEA KINATPGMKA IMTRTGDYFV NLNKRSEIAR NSKADLLVSI HADAFTSSQP
RGASVWVLSM RRANSEIGRW LEQKEKHSEL LGGAGEIIQS TDNEQYLAMT LLDMSMDRSM
AISHNIADDV LSNLGKVTKL HKHKPESASF AVLKSPDIPS ILVETGFISN HKEERLLSQR
EHQNNIAKAV HKGVLRYFES NPPVNSLLAS KGSFKHNVRS GESLSVIAHK YQVSINSIKK
ANGLKSNTLR IGQKLVIPRA