| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0794 |
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| Symbol | |
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| ID | 5611378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 942077 |
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| End bp | 943399 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931642 |
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| Product | N-acetylmuramoyl-L-alanine amidase |
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| Protein accession | YP_001472533 |
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| Protein GI | 157373933 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00345459 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAAGAA CTGATTTTAT TTTAAAGTTT CTATTGGTTA CATTTTCTCT TTGTGTATCT
TTTGTTGCCC AAAGTGCTAC TAAGCTCGAT GGCGTGAGAA TATGGGCTGC TCCGGAATCG
ACTCGGGTCG TATTCGATCT GAGTAAGGCG CCCAGCTTTA CCCATTTCAC GTTAACAGGG
CCCTACCGTT TGGTCGTCGA CCTTAAGGGG ACATCGACCG CGTTGAATCT CAAGAAGCTG
GCAAACAATA GTAAAATTGT AAAAAGAGTT CGTATTAGCA AGCCTCCTTC GAAGGGAACG
CTCAGGCTGG TTATCGACCT GACTAAGCCG GTAAAATCGA GCCTGTTTGC GCTATCACCA
ACGGCGCCAT ATGGTAACCG ATTAGTCGTC GATCTTGACG ATAGCCGTTC AGTATCGGCG
GCTAAACAAA CCAGCAAACC TAAGCAAAAA CTTCGTGACG TTATTGTGGC AATCGATGCC
GGCCATGGCG GGGATGATCC CGGTTCCATA GGTCCGACGG GGATATACGA GAAAAAAGTT
GTTTTAGAGA TTGCGAAAAA AGTCGAAGCA AAGATAAATG CAACACCAGG CATGAAGGCC
ATAATGACTC GAACAGGGGA TTATTTTGTT AATCTCAATA AGCGCTCTGA AATTGCACGA
AACAGCAAAG CCGATCTATT AGTTTCTATT CACGCAGATG CATTCACCTC CTCTCAACCC
AGAGGCGCTT CAGTGTGGGT ACTCTCTATG CGTCGTGCGA ACAGTGAAAT AGGTCGATGG
CTCGAGCAAA AAGAGAAGCA TTCGGAGCTA TTAGGCGGAG CGGGTGAAAT AATTCAAAGT
ACTGACAATG AACAGTATCT GGCTATGACT TTATTAGATA TGTCTATGGA TAGATCTATG
GCTATTAGTC ATAACATTGC CGATGATGTC CTTTCCAATT TAGGCAAGGT GACCAAATTG
CATAAGCATA AACCTGAGTC CGCCAGCTTT GCAGTACTCA AATCACCCGA TATTCCATCG
ATCTTGGTTG AAACCGGCTT TATTTCGAAC CATAAAGAGG AGCGACTCCT GTCGCAAAGA
GAGCATCAAA ATAATATTGC TAAGGCGGTA CATAAAGGGG TATTACGCTA TTTTGAATCG
AATCCCCCGG TAAACTCATT ACTGGCAAGC AAAGGTTCCT TTAAGCACAA TGTCCGTAGC
GGTGAATCAT TGTCAGTGAT AGCACACAAG TATCAAGTTT CAATAAACAG TATTAAGAAG
GCCAATGGCT TGAAATCAAA TACGTTACGT ATTGGTCAAA AGTTGGTTAT ACCAAGGGCT
TAA
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| Protein sequence | MIRTDFILKF LLVTFSLCVS FVAQSATKLD GVRIWAAPES TRVVFDLSKA PSFTHFTLTG
PYRLVVDLKG TSTALNLKKL ANNSKIVKRV RISKPPSKGT LRLVIDLTKP VKSSLFALSP
TAPYGNRLVV DLDDSRSVSA AKQTSKPKQK LRDVIVAIDA GHGGDDPGSI GPTGIYEKKV
VLEIAKKVEA KINATPGMKA IMTRTGDYFV NLNKRSEIAR NSKADLLVSI HADAFTSSQP
RGASVWVLSM RRANSEIGRW LEQKEKHSEL LGGAGEIIQS TDNEQYLAMT LLDMSMDRSM
AISHNIADDV LSNLGKVTKL HKHKPESASF AVLKSPDIPS ILVETGFISN HKEERLLSQR
EHQNNIAKAV HKGVLRYFES NPPVNSLLAS KGSFKHNVRS GESLSVIAHK YQVSINSIKK
ANGLKSNTLR IGQKLVIPRA
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