Gene Ssed_0793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0793 
Symbol 
ID5611377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp941616 
End bp942074 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content44% 
IMG OID640931641 
Producthypothetical protein 
Protein accessionYP_001472532 
Protein GI157373932 
COG category[R] General function prediction only 
COG ID[COG0802] Predicted ATPase or kinase 
TIGRFAM ID[TIGR00150] ATPase, YjeE family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.949281 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00232347 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACATCAG TAAAAGTCTA CCTCGATAAT GAACAAGATA CGGTGGATCT TGGTAAGCGA 
CTAGCGGCAA TTATTTCTCC ACCTCTGATG CTGAATTTGT CTGGCGAATT GGGTGCGGGT
AAGACAACCT TGAGTCGCGG TCTCATTCAA GCCTTAGGGC ATAAAGGGGC TGTGAAGAGT
CCAACCTACG CATTAGTCGA ACCCTATGAG TTTGATGGTA TTGATCTCTA TCACTTTGAC
CTTTACCGAT TGAGCGATCC TGAAGAGCTT GAATTTATGG GGATCAGAGA TTACTTTACT
GAAAAAAGTG TCTGTATTGT CGAATGGCCG GATAGAGGCC ATGGTCTATT GCCTGAGGCC
GATATCAGCC TGCAAATTAA CTATGTCGGT GAACGTAGAG AAGTTGAAAT TTCATCTGGT
TCATATAGGG GACAGCAACT CTTGAGTAAA CTCAAATAA
 
Protein sequence
MTSVKVYLDN EQDTVDLGKR LAAIISPPLM LNLSGELGAG KTTLSRGLIQ ALGHKGAVKS 
PTYALVEPYE FDGIDLYHFD LYRLSDPEEL EFMGIRDYFT EKSVCIVEWP DRGHGLLPEA
DISLQINYVG ERREVEISSG SYRGQQLLSK LK