Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0792 |
Symbol | |
ID | 5613923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 940004 |
End bp | 941482 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931640 |
Product | carbohydrate kinase, YjeF-related protein |
Protein accession | YP_001472531 |
Protein GI | 157373931 |
COG category | [G] Carbohydrate transport and metabolism [S] Function unknown |
COG ID | [COG0062] Uncharacterized conserved protein [COG0063] Predicted sugar kinase |
TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related [TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0035803 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGCCAA ACGGACCGAC TTTTCCTTGT GAAATGTTCT TAAGCTCGCA AGTACGAACC GCTGAACAAA AGTTTGTCGA TAGTGGAAAC ACAGATTTTT ATCGGCTTGT TGAGTCAGCG GGGAATGCTG CATTTGAGCA GATTGAGATG GCACAGGATA AATCGCGATC CATTTTGGTT GTTGTCGGTT ACGGTAACAA TGGTGCCGAT GGTTATGTGT GTGCAAGGAG GCTGTTAGAG TCGGGCTATA GTGTTGCGTT AATGGCATTT ACTCGAGAGA AAATGGGTGA TGAGGTACTT AAAGCACAAC GACTTTTCAT CGAGAGTGGT GGAGAGGTGG AGTGTTTTTC TCCGGAAAAG GTTGCCTCGG CAGATGTGAT CATCGATGGC TTACTCGGTA TTGGTTTTAG TGGCGAGATA AAAGGTGACT TTAAACTTGC TATCGATAGT ATCAACAGTA GTGATGCATG GGTGCTTAGT TTAGACATCC CCTCAGGTAT CAACGCAGAT ACTGGAACCG GAATTAATGC CGTAGAGGCC GATGTGACAC TCACTTTTGG TGCGGTTAAA CAAGGGCTAA TGACTGGTCG TGCAAGACAC TGTGTTGGGC AGTTGCTGTT TAAGGCTCTG GGGTTAACCG AATATCTGCC ACAGGCTAAC TCAATCAATG TCTCTATTGA TTATGTTAAT AAGCATATTA AACCTAGAGA CAGAGACTCA CATAAAGGCT TGTCTGGGAA AGTGTCTGTA ATTGGCGGCG ATGCCGGGAT GGCTGGTGCT GTTAGATTAG CCGGAGAGGC TTGCCTTAGG GCGGGAGCAG GTTTAGTTAC GGTAATATCC AGGCCTGAGC ATCAAATTGT CGTAAATTCG AACCGCCCCG AGCTGATGTT TTGGGGATGT GAGTTAGTCG ATATGGAAGT TTATCTTCGA CTCGGTTGGG CCAATATTTT GGTGATTGGT CCGGGCCTAG GCAAGCAAGA CTGGGGGTAC AATTTACTCA AGGCTGTAGG CTTGAGTGAT AAGCCTTGTG TGATGGATGC TGATGCCCTG AATTTACTCA GCGCCGAACA TGGCAGGCAG GATCATTGGG TTCTGACTCC CCACTCAGGC GAAGCTGCCA GGCTATTAGG CATTTCTACA CTGGAAGTTG AAAACGACAG GTTTGCGGCC GTTAAAGCCA TACAGCAGAA ATATGGTGGC GTGGTGGTAT TAAAGGGGCC GGGTACGTTA ATTTATGATG GTTCACAATG TTATGTCGCC CCTGTGGGTA ACCCCGGACT CGCCAGCGGC GGTTGTGGCG ATGTGTTATC AGGCATTATT GCTGCGCTGA TGGCGCAGGG GTTCGATAAA CTCTCCTCGG CAATAATGGG AGTGGTGGTA CATGGAGAAG CCGCCGACCG CGCCGCAATA GATGGAGAAA GGGGGATGCT TGCCAGTGAC TTAATGCCCC ATATCAGACA GTTGGTAAAC AAAATTTGA
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Protein sequence | MLPNGPTFPC EMFLSSQVRT AEQKFVDSGN TDFYRLVESA GNAAFEQIEM AQDKSRSILV VVGYGNNGAD GYVCARRLLE SGYSVALMAF TREKMGDEVL KAQRLFIESG GEVECFSPEK VASADVIIDG LLGIGFSGEI KGDFKLAIDS INSSDAWVLS LDIPSGINAD TGTGINAVEA DVTLTFGAVK QGLMTGRARH CVGQLLFKAL GLTEYLPQAN SINVSIDYVN KHIKPRDRDS HKGLSGKVSV IGGDAGMAGA VRLAGEACLR AGAGLVTVIS RPEHQIVVNS NRPELMFWGC ELVDMEVYLR LGWANILVIG PGLGKQDWGY NLLKAVGLSD KPCVMDADAL NLLSAEHGRQ DHWVLTPHSG EAARLLGIST LEVENDRFAA VKAIQQKYGG VVVLKGPGTL IYDGSQCYVA PVGNPGLASG GCGDVLSGII AALMAQGFDK LSSAIMGVVV HGEAADRAAI DGERGMLASD LMPHIRQLVN KI
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