| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0787 |
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| Symbol | |
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| ID | 5609918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 934132 |
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| End bp | 935010 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931631 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472526 |
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| Protein GI | 157373926 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5006] Predicted permease, DMT superfamily |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0809288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000526282 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATCAGG CTTCACAACT AAAACAATCA GGTTTATTGG AACTACACCT TGCTGTGCTG
CTATTTGGCG GCACAGCACT CTTCTCTAAA CTCATCCCCC TGAGTGCATT AGATATCACC
CTTCTAAGGT GTTTTGTCGC AGCCTTGGTA CTCGCACTCA TTGTCAAGGC AAGTAAACAC
CGACTGTTAT TAAACTCCGG ACGAGACTAT CTGATTGCGC TTGGATTAGG CATAGTGGTT
AGCCTGCATT GGGTGACATA CTTTGCCTCC ATGCAACTCT CATCCATCGC CATCGGCATG
ATCGCTTTCT TTACCTATCC GGTCATGACA GTTTTAATCG AGCCGATAAT TACCGGTAAC
AAAATTCAAA GAGTCGATGT TGTCAGCGGT ATCACTGTAC TCATAGGTGT GATTTTACTC
ATACCCGAAG CGAACCTGGG TAATGATGTG ACTTTAGGCA TCGCAGTTGG CGTTTTATCC
GCTGCATTTT TTACTGCGCG CAACTTACTC CATAAGCAAT ATTTCTCAGC TTACTCCGGT
CCCCAGGCGA TGTTTTATCA AACTGCAGTC GCCACTGTTT TTCTGGCTCC CTGGCATACC
GTTGAGATCA ACACTATAGA ACAGAATGTT TGGGGTTTAA TACTGCTGTT AGGCATTGTG
TTTACCGCCG CTCCCCATGC GTTATTTACA TCGGCATTAA GACATTTAAG TGCGAAAACC
GTCAGTTTAG TCTCCTGCCT CCAGCCATTC TATGGCGCCG TACTGGCCCT GTTTTTTCTT
GGTGAAAACC TGGAAATTAA AACAATTTTA GGAGGATTGC TCGTCGTCAC TACCGCAATT
TTCGAAACCC GACGGAGCCG GCGTTCATAT AGAAAATGA
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| Protein sequence | MDQASQLKQS GLLELHLAVL LFGGTALFSK LIPLSALDIT LLRCFVAALV LALIVKASKH
RLLLNSGRDY LIALGLGIVV SLHWVTYFAS MQLSSIAIGM IAFFTYPVMT VLIEPIITGN
KIQRVDVVSG ITVLIGVILL IPEANLGNDV TLGIAVGVLS AAFFTARNLL HKQYFSAYSG
PQAMFYQTAV ATVFLAPWHT VEINTIEQNV WGLILLLGIV FTAAPHALFT SALRHLSAKT
VSLVSCLQPF YGAVLALFFL GENLEIKTIL GGLLVVTTAI FETRRSRRSY RK
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