| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0781 |
|---|
| Symbol | |
|---|
| ID | 5611375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 925813 |
|---|
| End bp | 928086 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931625 |
|---|
| Product | DNA topoisomerase IV subunit A |
|---|
| Protein accession | YP_001472520 |
|---|
| Protein GI | 157373920 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.255419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000939983 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATG CGATAGATTT AAGTCTTGAT GGTGTAGAAC AGATGCCTCT TCGGCGCTTC
ACGGAAGCCG CCTATCTGAA CTATTCCATG TACGTCATTA TGGACCGTGC TTTGCCTCAC
ATCGGTGATG GGTTGAAGCC TGTACAACGT CGTATTATTT ACGCGATGAG CGAGCTTGGT
TTATCGGCTC AATCTAAGCA TAAGAAGTCA GCACGTACGG TCGGTGATGT ATTAGGTAAA
TACCATCCAC ATGGCGATAG CGCTTGTTAT GAGGCTATGG TATTGATGGC CCAGCCATTT
TCCTACAGGT ATCCATTGGT TGACGGTCAG GGCAACTGGG GAGCCCCGGA TGACCCTAAA
TCTTTTGCCG CTATGCGTTA CACCGAAGCT CGTTTGTCAA AATTCTCAGA GGTTCTTTTA
AGTGAGTTGG GGCAGGGGAC CGTCGATTGG GGCGTGAATT TTGATGGAAC GATGAAGGAG
CCATTGGTTC TGCCATCTCG TTTACCGCAT ATTCTACTCA ATGGTATAAC CGGTATTGCC
GTGGGGATGG CCACGGATGT ACCACCCCAT AATACACGTG AGTTAGTTGC CGCCTGTATT
GAGCTGCTCG ATAATCCGAA AGCGGATTTA GCCAAAATAA TGGAATTCGT TCCTGGGCCG
GATTATCCCA CTGAAGCCGA GATCATTACT CCCAGCAGTG ATATCAGTAA AATTTATACT
ACGGGCCGAG GCTCGATTAA AGCGCGAGCC GTCTATAAGA TTGAAAATGG CGAAGTGGTC
ATAACGGCGC TTCCTCATCA GGCCAGTGGC GGTAAGATCC TGGAGCAGGT AGCGGCTCAA
ATGCAGGCTA AAAAATTGCC TATGGTTGTC GATCTCAGAG ATGAATCCGA CCATGAGAAT
CCGGTTCGAA TCGTAGTGGT TCCCAGATCT AATCGAGTCG ATTGCGACCA GCTAATGGCT
CATCTGTTTG CTACTACGGA TTTAGAAAAA TCTTTCCGTG TAAACCTGAA TATTTTAGGT
CTGAACGGGC GTCCACAGGT GAAGGGCTTA AAGCAGATCC TGACCGAGTG GTTGGAATAT
CGTTTCCAGA CGGTGACCCG TCGTGTTCAA CATAGACTCG ACAAAATCTT ATCGAGATTG
CATATCCTTG AGGCCTTGAT GACGGCCTTC CTGAATATCG ATGAGGTGAT TGAGATTATC
CGTTATGAGG ATAATCCGAA AGCCGAATTG ATGTCGCGGT TTAATCTAAC CGATATTCAG
GCTGATGCCA TTCTCGATCT TAAGTTACGC CACCTGGCTA AACTCGAAGA GTTTAAGATC
AAGGGCGAGC AGAGTGAGCT TGAAGCCGAG CGTGACAAGC TACAACTGCT GTTGAGCTCA
GACAGGCGAA TGAAGACGCT TATTAAGAAA GAGTTGATAC AAGATGGCGA AACTTATGGC
GATGACAGAC GCTCCCCTCT GGTTGAACGT GGAGAGTCTA AGGCATTAAC AGAGCAGGAA
TTAGCACCAG TTGAAGCCGT GACTGTCGTG TTGTCAGAGA AAGGTTGGGT TCGCTGCGCT
AAAGGTCATG ATATCGATGC GAAGGCATTA TCTTATAAGT CCGGGGATGG GTTCCTCTGC
TCGGCTGCGG GTCGCAGTAA CCAACCTAGT GTGTTTATTG GTTCAACGGG GCGTGCTTTT
GCGACCGAGA CTCACACCCT ACCCTCGGCA AGGAGTCAGG GCGAGCCGAT AACGACGCGC
TTTAATCTGT CACCGGGTGA GGTGATGGAA CATGTATTAT TAGGCGATGA TGATAAATTC
TATCTACTCG CTTCAGATGC AGGCTATGGC TTTGTTGGTT CCTATAAGGA TATGGTATCC
CGTAACAAAG CGGGTAAAGC TTTATTGAGT CTGCCTGCCA ATGCTAAGGT CATCGTACCT
CAGATAGTCG ATAAGTCGAA GGTGGAGTCG ATACTGGCGA TCACCAATGA AGGTCGCATG
TTGTTATTCT CTCTTGAAGC CCTACCTCAG TTGTCAAAGG GTAAGGGTAA TAAAATCATC
GGTATTCCTA GCGAAAGAGC GAAGAGCCGG GAAGAGCTGT TATCGCATTT GCATGTGGTT
CCTGAAGATA CTGCGGTAAC ACTCTGGGCT GGTAAGCGTA AATTAACGCT AAAACCAAGC
GATCTGGAAC ATTATCGAGG TGAACGTGGT CGACGTGGGG CTAAGTTACC TCGTGGCTTA
CAGCGCGTCG ATAGTGTTGA GATTGGTGAT GGTTCGCTGA ACACTCCTGA ATAA
|
|---|
| Protein sequence | MSDAIDLSLD GVEQMPLRRF TEAAYLNYSM YVIMDRALPH IGDGLKPVQR RIIYAMSELG
LSAQSKHKKS ARTVGDVLGK YHPHGDSACY EAMVLMAQPF SYRYPLVDGQ GNWGAPDDPK
SFAAMRYTEA RLSKFSEVLL SELGQGTVDW GVNFDGTMKE PLVLPSRLPH ILLNGITGIA
VGMATDVPPH NTRELVAACI ELLDNPKADL AKIMEFVPGP DYPTEAEIIT PSSDISKIYT
TGRGSIKARA VYKIENGEVV ITALPHQASG GKILEQVAAQ MQAKKLPMVV DLRDESDHEN
PVRIVVVPRS NRVDCDQLMA HLFATTDLEK SFRVNLNILG LNGRPQVKGL KQILTEWLEY
RFQTVTRRVQ HRLDKILSRL HILEALMTAF LNIDEVIEII RYEDNPKAEL MSRFNLTDIQ
ADAILDLKLR HLAKLEEFKI KGEQSELEAE RDKLQLLLSS DRRMKTLIKK ELIQDGETYG
DDRRSPLVER GESKALTEQE LAPVEAVTVV LSEKGWVRCA KGHDIDAKAL SYKSGDGFLC
SAAGRSNQPS VFIGSTGRAF ATETHTLPSA RSQGEPITTR FNLSPGEVME HVLLGDDDKF
YLLASDAGYG FVGSYKDMVS RNKAGKALLS LPANAKVIVP QIVDKSKVES ILAITNEGRM
LLFSLEALPQ LSKGKGNKII GIPSERAKSR EELLSHLHVV PEDTAVTLWA GKRKLTLKPS
DLEHYRGERG RRGAKLPRGL QRVDSVEIGD GSLNTPE
|
|---|
| |