| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0780 |
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| Symbol | |
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| ID | 5611374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 924653 |
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| End bp | 925816 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931624 |
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| Product | L-sorbosone dehydrogenase, putative |
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| Protein accession | YP_001472519 |
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| Protein GI | 157373919 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.695554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000105496 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGTTGA ATCATACAAA AAAGCATAAA GGGATTTGGT TGTTTTGGGT TTGTGCCGCT
GTGCTATTTA GCCTGGGGGG ACAAGCCTTT TCTCAACCTA TAATGATCAC GGTAACTAAA
GGGTTTGGTA TAACTCTGTA TGCTTCCGAT TTGGGAGATG CCAAACAGTT AGCGTTGGGA
GATAAAGGGA CACTATTCGT TGGTTCACAT AAGAAGGGCA CAATACAGGC TTTGGTTGAT
AGTAATGCCG ACGGCAGAGT CGATAAGCGT TATGTCATTG CAAAAGGTTT GGAAGCGCCT
GAGGCTATCG CATTTTATAA GGGCGACCTT TATGCCGCGG TCGATGATAG AATTATTCGT
TTTGTCGATA TTGAGAACCG TTTAAGGCGC CCCGGTCGCG GTAAAGAAGT TTACGACCGT
TTACCGGGCA AAACCAATAA GAGTCGAAGA GCATTACATT TTGGTCCCGA TGGCCGATTG
TATGTGGCGA TTGGTGCCCC CTGTAATGTC TGTGAGGCTG TAGCACCTTT TGGTAGCATT
ATCGCCATAG ATATAGAGAG TGGAAGTAGT GAGCAGATAG CCACGGGTAT CCGTAATGTT
ACTGGCTTTG ATTGGTCGCC AATCGATAAC GAGCTTTGGT TTGCAGATTT AGGACGGGAC
TGGATGGGCG ATAGATTACC GCCAGACGAG ATCAATCGTG TTGAGCAAAT CGGTGCACAT
TATGGCTTCC CCTATATTCA TGCTAAGTCT GTGGTTGAAC CTGCTTACGA CAAGCCGAAA
AATCTCAAGA TCACGCTTCC GGCCTATGAA CTTCCTGCAC ACGTTGCACC TATGGGGCTT
CATTTTTATC GTGGTCAACA ATTTCCCGCT AAATACCATA ATCAGATGTT TGTCGCCGAA
AATGGGTCTT GGAATCGATC CAGTAAAATT GGCTACCAGG TTGTGATGTT GGAGATCGAA
AATCAACAAG TGATGAAGCG TAGTACTGTG GTCAGCTTTT TAGACGGGGA ATTTCCCGTA
GCCAGACCCT ACGCTTTATT AACGGCACCC GACGGTGCTA TGTATATCTC AGATGATCTT
AAAGGCAATA TCTATCGTTT GTTTTATAAA GATATTATTA AAGAAGAGAT TGAACCTGCT
CAAAAATTGG ATACTGAACA ATGA
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| Protein sequence | MLLNHTKKHK GIWLFWVCAA VLFSLGGQAF SQPIMITVTK GFGITLYASD LGDAKQLALG
DKGTLFVGSH KKGTIQALVD SNADGRVDKR YVIAKGLEAP EAIAFYKGDL YAAVDDRIIR
FVDIENRLRR PGRGKEVYDR LPGKTNKSRR ALHFGPDGRL YVAIGAPCNV CEAVAPFGSI
IAIDIESGSS EQIATGIRNV TGFDWSPIDN ELWFADLGRD WMGDRLPPDE INRVEQIGAH
YGFPYIHAKS VVEPAYDKPK NLKITLPAYE LPAHVAPMGL HFYRGQQFPA KYHNQMFVAE
NGSWNRSSKI GYQVVMLEIE NQQVMKRSTV VSFLDGEFPV ARPYALLTAP DGAMYISDDL
KGNIYRLFYK DIIKEEIEPA QKLDTEQ
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