Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0774 |
Symbol | tolC |
ID | 5614047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 917989 |
End bp | 919314 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931618 |
Product | outer membrane channel protein |
Protein accession | YP_001472513 |
Protein GI | 157373913 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000983275 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000104798 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAATTCA AGATCCGAAC GATATGTGCA GCTTTAACGC TTGCAGCCAC AACGTCAGCC GTACAGGCCG ATGATTTATT GCAGATTTAC GAACAAGCGC TTACAAGTGA TCCTATCGCC TTACAGGCAA AGGCTCAGCG AGATGCCCTG TACGAACAGA TTGAAGAAAA CCGTGCGCCG TTACTTCCTA CCATCAGCGC AAGCGTAGGT TATGGTAAAA GTTGGACTAA TGTTTCAGAA AGCGAATATA ACAGCGGCCT GAATGCCGGT GTCACCCTGA ACCAGGTGAT TTACGACCAC AGCGCATGGG TAGGACTAAG CTTAGCCGAG CTTGCGGCTT CTCAGGCCGA TGCCGCTTAT GCCTCGGAAC TGCAAAAGCT AATCATCCGA GTATCCGGTG CCTATTTCGA CGTTTTATCG GCTAAAGATA ACTTCGAATT TAAAGGTTCT GAGAAACGTG CTATCGAACG TCAGCTAGAG CAGACGAAGC AAAGATTTGC CGTAGGTCTG ACTGCCATTA CCGATGTACA CGAAGCTCAG GCTCAGTTTG ACTTGGCTCG CGCCTCTGAA ATTTTATCAG AAAACCAGTT GATCAACAGC TACGAAGCAT TGCGTGAAAT TACAGGTATC GATCATAAGT CTATCAATAT CTTAGATACC ACTCGTTTCA CCGCGGTCAC CCCAGCTCCA GCACAACCTA ACGACTGGTT GAAAATGGCT GAGACAAACA GTGTCGACCT GATGACCAGA CGTATCGGTA AAGATATCGC TCAAGAGACC ATCAGCCTCT ATAAAGCGGG TCACATGCCT TCGCTAAGTT TAAATGCGGG CTATACGACT AACCTTGAGC AGAAAGACGA GCTTAAAGAT AAAAGCGATT TTGATAATGC CAATGTCGCT TTGACATTGA GCGTACCGAT CTTTGAAGGC TTTAAAGTCA CATCAAAAGT CAATCAAGCT CAGTATCAGT TTGTTGATGC GAGTGAAAAG CTTGAACAGA CCTACCGTAA GGTCGTTAAA GATGTCCGCA ACAACTTTAA CAACGTAGGC GCTTCAATCA GCTCGATTAA AGCTTACGAG CAGTCGGTAC TCTCTTCAGA GAGCGCCTTG AAGGCGACTC AAGCAGGTTT CGAGGTCGGT ACCCGTACTA TTGTTGATGT ACTAAACCGA ACGCGTGATC TCTATGATTC TAAGCGTCAG TTATCTGATG CGCGTTACGG TTATATCAAC TCGATTCTGG CACTTAAGCA AGCCGCCGGA ACCTTGAATG AAGATGACGT CATCGCGATC AACAACGGCC TGACAGCACA AGCTGTAACG CCATAA
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Protein sequence | MKFKIRTICA ALTLAATTSA VQADDLLQIY EQALTSDPIA LQAKAQRDAL YEQIEENRAP LLPTISASVG YGKSWTNVSE SEYNSGLNAG VTLNQVIYDH SAWVGLSLAE LAASQADAAY ASELQKLIIR VSGAYFDVLS AKDNFEFKGS EKRAIERQLE QTKQRFAVGL TAITDVHEAQ AQFDLARASE ILSENQLINS YEALREITGI DHKSINILDT TRFTAVTPAP AQPNDWLKMA ETNSVDLMTR RIGKDIAQET ISLYKAGHMP SLSLNAGYTT NLEQKDELKD KSDFDNANVA LTLSVPIFEG FKVTSKVNQA QYQFVDASEK LEQTYRKVVK DVRNNFNNVG ASISSIKAYE QSVLSSESAL KATQAGFEVG TRTIVDVLNR TRDLYDSKRQ LSDARYGYIN SILALKQAAG TLNEDDVIAI NNGLTAQAVT P
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