| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0763 |
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| Symbol | alr |
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| ID | 5611018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 908755 |
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| End bp | 909831 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931607 |
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| Product | alanine racemase |
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| Protein accession | YP_001472502 |
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| Protein GI | 157373902 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0787] Alanine racemase |
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| TIGRFAM ID | [TIGR00492] alanine racemase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.347962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000881438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | TTGAAACCCT TTCCCCGTGC AGAGATCAGT AGTAAAGCAC TGCAGAATAA CTTAGCTCGT
CTCCGTGAAA TAGCTCCCGG GAGCAAAGTC ATGGCGGTTG TAAAAGCCAA CGGCTATGGT
CACGGCTTGC TTAATGTTGC CCATTGTCTG GATAACGCCG ATGGTTTCGG ACTCGCTCGT
CCGGAGGAGG CATTAGCACT GAGGGAAGGG GGGGTTAAAT CAAAATTGAT TTTGCTCGAA
GGCTTCTTCA GTCAAGTCGA TTTAACCACT CTGGTCGAAC ACGATATCGA TACCGTTGTT
CATAATGAAG TGCAGCTGGA ATTGCTGGAA AGCTCGATAC TGGCAAAACC TGCAACCGTA
TGGCTTAAAA TTGACTCGGG TATGCATAGA TTAGGTTTCA CTCCTGAGCA GTTTGCTGCT
GTTTATGCCC GGTTAGAGGC CTGTCCTCAA GTCGCTAAAC CTATCAACCT GATGTCACAT
TTTGCTTGTG CCGATGAACC CGATAACCCA TCGACAAAGG TTCAGATTAA TCTCTTTAAC
GATCTTATAA AAGACTTGCC CGGTCAACGT AGTTTGGCAA ACTCAGCCGG TACCCTGTAT
TGGCCTGAGA GTCAGGCAGA TTGGATACGT CCCGGTATCG CGCTATACGG TGTATCGCCT
GTGATTGGGG ATCTGGGGGG CAATCATGGT TTGATGCCTG CCATGGAGTT AGTGTCGCAA
CTTATTGCCG TACGTGATCA TAAGGCTGGT GAGCCTGTTG GTTATGGCAG TTCCTGGTAT
GCAAAAGAAG ACACTAAGTT AGGCGTCGTG GCTATTGGTT ACGGCGATGG ATACCCACGT
AATGCACCCG AAGGTACGCC AGTATGGGTC AACGGGAGAC GGGTTCCTAT CGTGGGTCGC
GTCTCTATGG ATATGCTGAC CGTCGATTTA GGCATAAACG CGACAGACCT GATTGGCGAT
GATGCGATTT TATGGGGAAA AGCATTACCC GTTGAAGAGG TGGCAGAGCA TATAGGCACA
ATCGCTTATG AGTTAGTGAC TAAATTGACC CCTCGAGTTG CCGTGTGCTT GGACTAA
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| Protein sequence | MKPFPRAEIS SKALQNNLAR LREIAPGSKV MAVVKANGYG HGLLNVAHCL DNADGFGLAR
PEEALALREG GVKSKLILLE GFFSQVDLTT LVEHDIDTVV HNEVQLELLE SSILAKPATV
WLKIDSGMHR LGFTPEQFAA VYARLEACPQ VAKPINLMSH FACADEPDNP STKVQINLFN
DLIKDLPGQR SLANSAGTLY WPESQADWIR PGIALYGVSP VIGDLGGNHG LMPAMELVSQ
LIAVRDHKAG EPVGYGSSWY AKEDTKLGVV AIGYGDGYPR NAPEGTPVWV NGRRVPIVGR
VSMDMLTVDL GINATDLIGD DAILWGKALP VEEVAEHIGT IAYELVTKLT PRVAVCLD
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