| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0752 |
|---|
| Symbol | |
|---|
| ID | 5611051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 894661 |
|---|
| End bp | 897162 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931596 |
|---|
| Product | exoribonuclease II |
|---|
| Protein accession | YP_001472491 |
|---|
| Protein GI | 157373891 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000040627 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00244525 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAG ATCCGCATTT GAAGCGTGAA CAAGAAAATT ATGAAAACCC CATTCCTAGC
CGCGAGTTTA TTTTAGAGTA CTTGCGATCT GAAACATCAC CTCTGAACCG TGAACGTATA
GCCACAGCTC TGAAGATCGA AGGTGAAGAG CAGCTTGAAG CACTCAGGCG TCGCCTGCGT
GCCATGGAGC GTGACGGTCA GTTAGTCTTT ACCCGTGGTC AAGCCTATGG TTTACCAGAG
AGAATGGACC TGTTAACAGG AACGATTATT GGGCATAAAG ATGGTTTTGG CTTCCTGAAG
CTTGAGGAGG GCGGTGACGA CCTCTTTATT AATAACCGTG ACATGCAGAT GTATTTTCAC
GGCGATAAGG TACTGGCACA AAAAGCTGGT GTCGATCGCA AAGGCCGCCG TGAAGCCAGA
CTCGTTCGTT TAGTCGAGCA GAGAACTGCC GCTCTCGTGG GCCGTTTCCA TCTGGATTCA
GGTATGGCTT TTGTTATCGC CGATGACAGA AGAATAACCC AAGAGATCCT AATTCCTGAC
GAAGATCGCA ATGGTGCCCG TCAAGGCGAT ATTGTGGTGT TAGAGCTCAC TCGTCGACCA
GGCCGATATG TTAAAGCGGC AGGTAAAGTA ACCGAGGTGC TGGGTCAGCA GATGGCACCG
GGAATGGAGA TCGAGATTGC CCTGCGTAAC TACGATCTAC CCCATACCTG GTCGGGATTG
ATTGAGAAAA AATTGCGTGC GATTCCCGAT GAAGTGACTG AGGCAGACAA AGAGGCGCGA
GTCGATCTCA GAGGTTTGCC GCTGGTTACT ATCGATGGCG AAGATGCCCG CGATTTCGAT
GACGCTGTAT ATGCTGAAAA GAAAAAGAGT GGTGGCTGGC GCTTATGGGT CGCTATCGCC
GATGTTAGCC ATTACGTGCG CACTGAATCT GCACTGGACA GAGAGGCACG TAGCCGAGGT
AACTCAGTCT ATTTTCCATC GCAAGTGATC CCTATGCTGC CGGAGAAGAT CTCAAACGGA
TTATGCTCTT TGATGCCTGA GGTCGATCGT CTGTGTATGG TCGCTGAGAT GACGATCTCT
GCTGCTGGTA AATTATCGGG TTACAAGTTC TACCCTGCCG TGATGCACTC TCATGCTCGT
CTGACTTATA CCCAAGTGGC CGATATGCTC GAAGGTGGAG AGGTGAGTGA TAAGCTCAAA
CCTATTTTCC CACACCTTCA GACGCTGCAG TCTCTGTACC TGACTCTAGA CGAGACTCGC
GCCGAACGCG GTGCTATCGC ATTTGAAACT ACTGAGACTC AGTTCGTTTT CAATGATGAC
AGGAAGATTG ACAGCATAGT GCCACGCAAT CGCAATCAGG CGCATAAGAT CATTGAAGAA
TGCATGATCT TAGCCAACGT TGCCTCGGCT AAGTTTGTGA AAAAGCACAA AGGTGAAGTG
CTTTATCGCG TACATGAGTC ACCATCTGAG CAGAAGTTAA CTAACTTCAA AGACTTCTTG
AAAGAGCGTG GTTTAACCAT GGAAGGCGGG CTTGAGCCTA CGCCTAAAGA TTATCAGGCC
ATCATGGAGA AGATTGCCGA TAGACCCGAT GCCGAACTGA TTCAGGTGAT GTTGTTACGC
TCTATGCGTC AGGCAACATA CACCCCGGAT AACGAAGGGC ACTTTGGTTT AGCCCTGGAG
GCATATTCGC ATTTTACTTC GCCTATTCGT CGCTACCCGG ATCTGATCCT GCATCGCGTC
ATTCGTTATC TGTTAGCGAA GGAGAAAGGT GAGGCGAAAG AGAAGTGGAC GCCCTGTGGT
GGTTACAATT ATCAAATTGA AGAGCTCGAC CTGCTAGGTG AAGAGTGTTC GACCACAGAG
CGCCGAGCCG ATGAAGCGAC GCGTGACGTG AGTGACTGGC TCAAGTGTGA ATTTATGCAG
GACCATGTCG GTGATACGTT CGAGGCTGTA ATTGCCTCCG TGACCCACTT CGGCATGTTT
GTTCGTTTAG ATAAACTGTT TATCGATGGT CTGGTTCATA TCTCCAGTCT GGGTAGCGAT
TACTATCAAT ATGATAATAT GCGCCAACGC CTGGTCGGTG AAGCCTCGGG TCAAGTCTAT
CAACTTGGTG ATGCGGTAAC GGTTAAGGTC GCCGGTGTTA ATCTTGATGA TCGTCAGATC
GATCTGATGA TGGCGGGTGA GGAAGGTAAG TCTAAACGTC CAAGCCGTGG CAAGAAGCCG
ATGACAGCCC GTGAGAGAGT GAATGCCGAA GGCGCCAAAT TGGCCAAGGG TGATAAGAGC
GACAAGCCTA AACGACGCGG TTCTCGCTCA AAAGCCGGTA AGGGTAAAGC TTCTGGTGAA
AAGAGCCTAG GTTCTGGTAA AACGAGTACA AGTGGTGGAG CTAAGAAGTC CGGCGCTAAA
ACAGCAACGG CAGCTAAGAA GTCGAAGGCT AAAAAGTCTT CAGCAAAAAA GAGCTCGGCC
AAGCGTAAAG TCAAAGCAAG CAATAGAGAC AGTAATAGAT GA
|
|---|
| Protein sequence | MIKDPHLKRE QENYENPIPS REFILEYLRS ETSPLNRERI ATALKIEGEE QLEALRRRLR
AMERDGQLVF TRGQAYGLPE RMDLLTGTII GHKDGFGFLK LEEGGDDLFI NNRDMQMYFH
GDKVLAQKAG VDRKGRREAR LVRLVEQRTA ALVGRFHLDS GMAFVIADDR RITQEILIPD
EDRNGARQGD IVVLELTRRP GRYVKAAGKV TEVLGQQMAP GMEIEIALRN YDLPHTWSGL
IEKKLRAIPD EVTEADKEAR VDLRGLPLVT IDGEDARDFD DAVYAEKKKS GGWRLWVAIA
DVSHYVRTES ALDREARSRG NSVYFPSQVI PMLPEKISNG LCSLMPEVDR LCMVAEMTIS
AAGKLSGYKF YPAVMHSHAR LTYTQVADML EGGEVSDKLK PIFPHLQTLQ SLYLTLDETR
AERGAIAFET TETQFVFNDD RKIDSIVPRN RNQAHKIIEE CMILANVASA KFVKKHKGEV
LYRVHESPSE QKLTNFKDFL KERGLTMEGG LEPTPKDYQA IMEKIADRPD AELIQVMLLR
SMRQATYTPD NEGHFGLALE AYSHFTSPIR RYPDLILHRV IRYLLAKEKG EAKEKWTPCG
GYNYQIEELD LLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTHFGMF
VRLDKLFIDG LVHISSLGSD YYQYDNMRQR LVGEASGQVY QLGDAVTVKV AGVNLDDRQI
DLMMAGEEGK SKRPSRGKKP MTARERVNAE GAKLAKGDKS DKPKRRGSRS KAGKGKASGE
KSLGSGKTST SGGAKKSGAK TATAAKKSKA KKSSAKKSSA KRKVKASNRD SNR
|
|---|
| |