| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0751 |
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| Symbol | |
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| ID | 5611050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 893925 |
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| End bp | 894608 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931595 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001472490 |
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| Protein GI | 157373890 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000018908 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00284234 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTGT CGTTGAGAGA ATCCATGTTG CGAGAAGTGC TAAAAGGTTC AATAAGAACC
GTACTAAGAT ATCTATTGGT TGCAATGTTT TCGCTATCAC CCATGCTGAG CTGGGCTGAT
ACGAAGGCGT TAGATATCTA TAGTCAGGAG CAGCTCATTG AGCTTATTCG AACTAAACAG
TATCTCACCC GAGTGACGGG TGATGATTGT CAGCTAGTTC AGGATATTGA AGCCAGAGCA
GAAGTACTGA AATTGCCGCT CTATCAGTAC TTATGGGCAG AGATGCTCAA TTATGGAATT
TGCGTGAAGG CGAACCCTCC CAGAGGCATC TCTCTGCTAA GAAATTCTGC AGAACAGGGT
AGCGCCGAGG CGATGGTGAG AATTGCCGAG TACTACCATG ACGGCCAATT TGTGATCCAG
GATAAAGAGC GTGCGATTCA TTATGTATTG CCCGCAGCAG CCAATGGTGA CCTGCCGGCA
CGGTTGATGT TAGTCAGGTT GTTTGGTGAG GGCTATGGTA GTCCAAGAGA TTTTGAGATG
GCATACCATT GGCTGTATAA CGATGTATTT AGTGATGAGG CTACCAAGAA AGAAGCCTTA
GAATTATTGA AGGTGCTCGA AGAGAAAATG CCGCCCAGCG CGATAGCTAG GGCAAAACAG
GAGCACCTGA GATCCCGTAA ATGA
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| Protein sequence | MNLSLRESML REVLKGSIRT VLRYLLVAMF SLSPMLSWAD TKALDIYSQE QLIELIRTKQ
YLTRVTGDDC QLVQDIEARA EVLKLPLYQY LWAEMLNYGI CVKANPPRGI SLLRNSAEQG
SAEAMVRIAE YYHDGQFVIQ DKERAIHYVL PAAANGDLPA RLMLVRLFGE GYGSPRDFEM
AYHWLYNDVF SDEATKKEAL ELLKVLEEKM PPSAIARAKQ EHLRSRK
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