| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0743 |
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| Symbol | |
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| ID | 5611008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 886579 |
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| End bp | 887664 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931587 |
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| Product | 2-alkenal reductase |
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| Protein accession | YP_001472482 |
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| Protein GI | 157373882 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.107193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.305104 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCTCA AAGACACACT ATTATATGTC GGCAAGGCAG TTATTTTTGG CCTGATAATG
GCTGCTGTCT TTCTTTTTGT GACTCCACTG TTGACTAACA AGGACGCATC GAGCCTTTTT
ATTCAGAAGC GCGGTGATAA TGGCTTCGAG CTTTCATTTT CTAAAGCTGT CCGCCGGGCA
GCTCCCGCTG TCGTCAATAT ATATAGCTTA AGTGTCAACC GTGACCAGCC GCTTAACTCA
GGCTCACTTC AAGGCTTGGG CTCTGGCGTG ATCATGAGTA ATGAAGGCTA CATTCTCACT
AACTATCATG TAATAAAAAA TGCCGATGAA ATCGTCGTCG CATTGCAAGA TGGCCGCAAG
TTCACCTCAG AAGTCGTAGG CTCAGATTCG ATAACCGACC TTGCCGTACT TAAAATTGAG
GGGGGCAATC TGCCTATCGT CCCTATAAAC CTGGATGTAC CGGCCTTAGT TGGTGATGTC
GTCCTGGCCA TTGGCAACCC TTATAACCTT GGCCAAACCA TCACACAGGG TATTATCAGT
GCGACGGGTC GTAACGGTTT GAGCTCTGGC TATCTTGATT TCCTACAAAC CGATGCCGCA
ATTAATGCGG GGAATTCCGG TGGTGCATTG ATCGATACCA GTGGTCAGCT TATTGGCATC
AATACAGCGG CATTTCAGGT TGGCGAAGAA GGTGGAGGCC ATGGCATCAA TTTCGCGATC
CCGATTAAGC TTGCTCACAG CATCATGGGT AAACTGATCA AAGATGGTCG CGTCATACGT
GGAGCCTTAG GTATTACAGG TGAACCCATC AGCTCTATGG TGGCTCAGAT ATTAAACCTT
CCGGATCTAA CCGGAGTGAT GATCACCGGC GTAGACCCTC AGGGGCCTGC GGCGCAAGCA
CAACTCGCTC CAAGAGATGT TATCACTAAG TATGAAGGTG AAGTCGTACC GGGAGTCGAA
ATGCTGATGG ATAGAATTGC CGAAACAACG CCCGGCAAGC AGATAACAAT GACAATTATC
CGTAAAGGTA AATACTACGA TGTCCCTGTC ACTATCGGTG AGAATCTCTC TGCAGAAGAG
CAATAA
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| Protein sequence | MALKDTLLYV GKAVIFGLIM AAVFLFVTPL LTNKDASSLF IQKRGDNGFE LSFSKAVRRA
APAVVNIYSL SVNRDQPLNS GSLQGLGSGV IMSNEGYILT NYHVIKNADE IVVALQDGRK
FTSEVVGSDS ITDLAVLKIE GGNLPIVPIN LDVPALVGDV VLAIGNPYNL GQTITQGIIS
ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTSGQLIGI NTAAFQVGEE GGGHGINFAI
PIKLAHSIMG KLIKDGRVIR GALGITGEPI SSMVAQILNL PDLTGVMITG VDPQGPAAQA
QLAPRDVITK YEGEVVPGVE MLMDRIAETT PGKQITMTII RKGKYYDVPV TIGENLSAEE
Q
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