| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0740 |
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| Symbol | |
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| ID | 5611686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 881831 |
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| End bp | 883243 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931584 |
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| Product | Signal transduction histidine kinase-like protein |
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| Protein accession | YP_001472479 |
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| Protein GI | 157373879 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.350353 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACAT TTATTACTTT CAATATTTAC CTATTCTACG GCCTGGTCTT TTTTTCAATA
GGCTGTGTAG TCGTGTTTAG AAATTTCAAA TACAGCCAAC TTAAAATCGC CCCAACTCTC
TGGGCGCTGG CACTATTTGG TTTCTCCCAT GCTTTTCACG AATGGTCCGA GTTATACCTG
CTGGAGTTTA GTGATGATAT TCCCGGCAAG TTTCATCTGA TGGCCGAGTG GCTCAGGCTG
TTGAAGCTGT TTCTCTCATA TGCTTTCTTG ATGGTGTTCG CCTGGCTGCT GTTCGGAATT
GGGACCAGAT GGGTCGCCAG AGTTGGACGC AGTGTCGTGA TTGCGACGCT TCTGGCCTAC
TTAGGGACCG TTATCTACTT TTCTCATGCT ATCTATCTTG CCGAAGATAC GTTTCGGCAA
GCTACGTTTT ATACCCGGCT CTTCTTAGGG TTTGGCAGTG CCTTTTTGGC TGCAACCGGG
ATTGCTCTCT ACGGCTATAA GCTGATGCAG GAGCAGCATA AATATGGCAG CTACTTTATC
GCAACCGGTG TTGGCTTGCT CTGTTACGGG GTTATGTCGG GTTTAGTGCC TACGGATCTA
CACCACAGTA TTCCCGTGTT TCGCACTCTG GCTGGCGCAT TGATTCTGTT TGCTCTGTTT
AAGGCATTAA AAGTGTTCGA TATTGAGAAG GAGCTGGCAA CCGAGGCGAA GCTTAAACGC
GCAATCGAAG CCGATAAATA TAAAGCGATT GGTCACCTGG CTATGGGGAT GGCCCATGAG
ATCAATAACC CCTTGGCTTC ATCGACCTTA GCCCTGGATA TATTTCAGCG AAAATCTCCG
GAGCTAGATG AACAGCAACT CAAGTATATC GAGCGTATCA GCCTGGGTAT CGAGCGAGCA
TCGGAGATCA GTAAAGAGTT ACTCGCCTAT GCGCGCCCTG CAAAGGGGAA TACTTCACTC
GTGCCTGTGA GTGAGGTGAT TAGCGCCTCC ATCCACCTCT TGTCCCATAA GCATCACAGC
CATAGGATCA ACATCGATTG CGAAGAAAAT ATCACCATAA TGGGGCAGAA GGTGAAGCTG
GAGGAGTTAC TGATAAATTT GCTAACCAAT GCCATGGATG CTTCTCAGTC CGGTAGCGAG
ATTGCCATTA CGGCCGGTGA GTGCGACAGG TATGTGAGGT TGACCGTCGA AGACTGGGGC
GCAGGTATGG ATTCTGAAAG CCTCTCAAGA GCAACCGAGC TTTTTTATTC GACCAAGCCG
ATAGGTCAGG GAACCGGACT TGGTCTGGCT ATCTGTGAGC AGATTGTGGC ACTTCACCGT
GGAGTGTTAA ATATTGCGAG TGAGCTGGGA CAGGGAACAA AAATTGAGAT GCACTTTCCT
AAACCGGAAT TTTTTGAAAA AGATCAGCTA TAA
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| Protein sequence | MPTFITFNIY LFYGLVFFSI GCVVVFRNFK YSQLKIAPTL WALALFGFSH AFHEWSELYL
LEFSDDIPGK FHLMAEWLRL LKLFLSYAFL MVFAWLLFGI GTRWVARVGR SVVIATLLAY
LGTVIYFSHA IYLAEDTFRQ ATFYTRLFLG FGSAFLAATG IALYGYKLMQ EQHKYGSYFI
ATGVGLLCYG VMSGLVPTDL HHSIPVFRTL AGALILFALF KALKVFDIEK ELATEAKLKR
AIEADKYKAI GHLAMGMAHE INNPLASSTL ALDIFQRKSP ELDEQQLKYI ERISLGIERA
SEISKELLAY ARPAKGNTSL VPVSEVISAS IHLLSHKHHS HRINIDCEEN ITIMGQKVKL
EELLINLLTN AMDASQSGSE IAITAGECDR YVRLTVEDWG AGMDSESLSR ATELFYSTKP
IGQGTGLGLA ICEQIVALHR GVLNIASELG QGTKIEMHFP KPEFFEKDQL
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