Gene Ssed_0728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0728 
Symbol 
ID5611772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp872813 
End bp873466 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content46% 
IMG OID640931572 
ProductOstA family protein 
Protein accessionYP_001472467 
Protein GI157373867 
COG category[S] Function unknown 
COG ID[COG1934] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03002] lipopolysaccharide transport periplasmic protein LptA 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.201644 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAAA ATAAATTACT TATCATCGCC TTACTATCTA TAGTTAGTTT TAGTGGTATG 
GCTAAACTGG ACGATCTAAA GCAAGAAGTT AAGATCTCTG CCGCCAGCCA GGAAGCGGAT
ATTAAAAATA ACCAGATCAT CTTCAATGGC CCCGTCGAAG TCACGCAGGG TTCAGTAAAG
ATCCTGGCCG ATGAGCTCAG GGCATTTTCT AAAGAGGAAG GTGGCGGAAA GATACTGGTT
GCAACGGGAA GCCCTGCCAC CTATTCACAG ATAATGGAAG ATGGTCGCCC GGCATCAGCG
AGTGCCAAAG AGATACGCTA CGAACTCTCC AGTCGAACCC TAACCCTTAT CGGGAATGCC
ACTCTGGAAC AGGCTGGCAG CCAAGTAACG GGACACCAGA TCCGTTATAA CATCGCTAAG
CAACAACTCA TTGCTGAAAG TACCGGCAAT GACAGAGTGA TCACCATCAT TCAACCTGAA
AACTATCAGG AAGAGACAAA GCCTGAACAG CAAATACCAA CACCATCAGA TGAGCCAGAA
AACTATCAGG AAGAGACAAA ACCTGAGACA AAAACTCTAA CACCATCAGA TGAACCTGAG
ACGAAAAAAG AGACTCAGCC GGAACAAACG ACTATAAAAC AGGAGCCAAA ATGA
 
Protein sequence
MKQNKLLIIA LLSIVSFSGM AKLDDLKQEV KISAASQEAD IKNNQIIFNG PVEVTQGSVK 
ILADELRAFS KEEGGGKILV ATGSPATYSQ IMEDGRPASA SAKEIRYELS SRTLTLIGNA
TLEQAGSQVT GHQIRYNIAK QQLIAESTGN DRVITIIQPE NYQEETKPEQ QIPTPSDEPE
NYQEETKPET KTLTPSDEPE TKKETQPEQT TIKQEPK