Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0728 |
Symbol | |
ID | 5611772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 872813 |
End bp | 873466 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931572 |
Product | OstA family protein |
Protein accession | YP_001472467 |
Protein GI | 157373867 |
COG category | [S] Function unknown |
COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.201644 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAA ATAAATTACT TATCATCGCC TTACTATCTA TAGTTAGTTT TAGTGGTATG GCTAAACTGG ACGATCTAAA GCAAGAAGTT AAGATCTCTG CCGCCAGCCA GGAAGCGGAT ATTAAAAATA ACCAGATCAT CTTCAATGGC CCCGTCGAAG TCACGCAGGG TTCAGTAAAG ATCCTGGCCG ATGAGCTCAG GGCATTTTCT AAAGAGGAAG GTGGCGGAAA GATACTGGTT GCAACGGGAA GCCCTGCCAC CTATTCACAG ATAATGGAAG ATGGTCGCCC GGCATCAGCG AGTGCCAAAG AGATACGCTA CGAACTCTCC AGTCGAACCC TAACCCTTAT CGGGAATGCC ACTCTGGAAC AGGCTGGCAG CCAAGTAACG GGACACCAGA TCCGTTATAA CATCGCTAAG CAACAACTCA TTGCTGAAAG TACCGGCAAT GACAGAGTGA TCACCATCAT TCAACCTGAA AACTATCAGG AAGAGACAAA GCCTGAACAG CAAATACCAA CACCATCAGA TGAGCCAGAA AACTATCAGG AAGAGACAAA ACCTGAGACA AAAACTCTAA CACCATCAGA TGAACCTGAG ACGAAAAAAG AGACTCAGCC GGAACAAACG ACTATAAAAC AGGAGCCAAA ATGA
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Protein sequence | MKQNKLLIIA LLSIVSFSGM AKLDDLKQEV KISAASQEAD IKNNQIIFNG PVEVTQGSVK ILADELRAFS KEEGGGKILV ATGSPATYSQ IMEDGRPASA SAKEIRYELS SRTLTLIGNA TLEQAGSQVT GHQIRYNIAK QQLIAESTGN DRVITIIQPE NYQEETKPEQ QIPTPSDEPE NYQEETKPET KTLTPSDEPE TKKETQPEQT TIKQEPK
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