| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0724 |
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| Symbol | |
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| ID | 5611800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 869651 |
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| End bp | 870094 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931568 |
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| Product | PTS IIA-like nitrogen-regulatory protein PtsN |
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| Protein accession | YP_001472463 |
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| Protein GI | 157373863 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
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| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.124762 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACTTA GTAAGATCCT GCAGCCGGAG TGCACAACCT GCGCCACTCC GGGCAGTAAG
AAAAAGGTAC TGGAACTTAT CAGCGATCTT GCGGCTGTCC AGTACCCGAC CCTTACCTCT
CAAGAGATAT TTGAAAGCCT TTTGGCTAGA GAGAAGATGG GCAGCACGGG GATAGGTAAT
GGTATTGCAA TTCCTCACGG GAGATTAACC AATATAAGTC AACCAGTTGC AGTTCTAATC
AAGTGTGAAG AGCCTATCGC TTTCGACTCG ATTGATAAAC AGCCGGTAGA TATACTATTT
GCGCTATTAG TGCCTGCGGA TCAATGTGAG CAGCATTTGA GTACCCTGTC GACTATGGCA
GAGAAGCTCA ATGATAAGCT GATATTGAAG CAGTTACGCA AAACACAAGA TGAATCAGAA
CTCTATCAGG TAATTACTCA ATGA
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| Protein sequence | MELSKILQPE CTTCATPGSK KKVLELISDL AAVQYPTLTS QEIFESLLAR EKMGSTGIGN
GIAIPHGRLT NISQPVAVLI KCEEPIAFDS IDKQPVDILF ALLVPADQCE QHLSTLSTMA
EKLNDKLILK QLRKTQDESE LYQVITQ
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