Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0716 |
Symbol | |
ID | 5611877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 862607 |
End bp | 863287 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931560 |
Product | OmpA/MotB domain-containing protein |
Protein accession | YP_001472455 |
Protein GI | 157373855 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.12728 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTATTT CTAAAAATTC TTTTGTTGTG AAGGCTGTTT TGGGGTGTTC ATTAATCGTA TTAGCCGGTT GTCAAACGAC TAACCCTTAT AGCAACGAGA GTCAAAATGC CAAGGCGACC AATGGTGCGC TTATCGGTGC TATTGCCGGT GCTGCGATTG GCGTTGCTTC ATCGAGCCGT AGCGATCGTG GTAAGGGAGC GTTAATTGGC GCCGCATCGG GTGCTGCACT GGGTGGTGGT ATCGGTTATT ACATGGATAC TCAGGAGGCT GAATTAAGAA AGCAGCTTCA ATCGACCGGT GTCAGTGTGA CTCGCAGTGG CGATAATATT GTATTGAATA TGCCAAACGA AGTGACCTTT GGTGTGGATC AGACCGATCT GAGTTCAGGT GCTAAAAGAG TACTTAACAG TGTCGCTTTG GTTGCTAAAG AATACGATCA AACTCAGTTG AATGTGCTTG GTTATACCGA CAGTTCAGGG GCCGAATCAT ACAACTTAAG GCTATCGAAA ATTCGTGCTA TCGAAGTGGG TAACTACTTA GTCGCTCAGA AGATCGAATA TGGCAGAGTG AAATCAGAAG GTCTCGGCGA GTCAAGACCC ATTGCGACTA ATGCAACGGC TGAAGGCCGA GCGCAAAACC GCAGAGTTGA AATCGTGTTA AGCCCGCTAC CACAGGGCTG A
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Protein sequence | MLISKNSFVV KAVLGCSLIV LAGCQTTNPY SNESQNAKAT NGALIGAIAG AAIGVASSSR SDRGKGALIG AASGAALGGG IGYYMDTQEA ELRKQLQSTG VSVTRSGDNI VLNMPNEVTF GVDQTDLSSG AKRVLNSVAL VAKEYDQTQL NVLGYTDSSG AESYNLRLSK IRAIEVGNYL VAQKIEYGRV KSEGLGESRP IATNATAEGR AQNRRVEIVL SPLPQG
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