| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0713 |
|---|
| Symbol | |
|---|
| ID | 5611999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 859613 |
|---|
| End bp | 860644 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931557 |
|---|
| Product | glycosyl transferase |
|---|
| Protein accession | YP_001472452 |
|---|
| Protein GI | 157373852 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0273832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGC CAACGTCAAC AAATCGCGGT GATGGTCAGA TTTGTCTCTC TATTCTTATT
CCTATGTACA ACGAGGCTGA AATGCTTCAG CCACTCTTTT CCCGTTTAAG CCAAGTGTTA
TCGAGTATCC CCGAGTCCTC TGAGATCGTA TTTATAGATG ATGGGAGTAG CGATAAGACC
TGGGATCTAC TGCAGCAGTT ACCCGTCTCA TCCAGTGAAC ATCAGTGTAT TCGTCTGAGT
CGAAATTTTG GTAAAGAGGC GGCGATGACC GCAGGATTAG AGCAGGCAAG GGGGTTGGCG
GTTATCCTGC TCGATGCCGA CCTTCAGGAC CCTCCGGAGT TGATCCCTCA GATGTTGCAG
GCTTGGAGGG AGGGCTTCGA TGTTGTCAAT ATGAAGCGCA GGAAACGCTT GGGGGAATCC
TGGTTTAAGC GTCTGTCTGC TGCCGCCTTT TATCGGGTGA TCAATAGTAT GGCTGAGTCG
CCCGTGCCGG AGAATGTCGG AGATTTTAGG CTAATCAGCC GTCAGGTAGT AGACAGTATC
AACGAATTAC CCGAAAGAAA TCGATTCATG AAAGGGATCC TGAGCTGGCC GGGGTTCTCT
CAGACCGAGA TTCTGTTCGA TCGTGATCCC CGCCATCTCG GAGAGACTAA ATGGAATTAC
AGTAAGCTTA TCGGTTTAGC TATGGATGGC ATTACCTCAT TTAGTATCAA GCCATTGAGG
TTGGCGACTT GGGCCGGTCT ACTCACCGCT TTATCTGCAT TTACCTACGG TGGTTGGGTA
TTTTTGAAGA CGGTATTGTG GGGCGGTGAG GTGGCTGGTT ATCCATCACT GATGATAGTG
CAGGTGGCTC TGGCCGGGGT TCAACTATTG GCGCTTGGTT TGATTGGTGA GTATTTAGGT
CGAGTATTTA TGGAAGTAAA ACAGAGGCCT ATATATCTGA TCCGTGAGGT TGAGCAGCAA
CAGAGTACAC GTACCAGTGT GAGTCATGCT GAGGTGGGTG AGAATGTTCG CTATCTGGAG
TCGACGCGAT GA
|
|---|
| Protein sequence | MAQPTSTNRG DGQICLSILI PMYNEAEMLQ PLFSRLSQVL SSIPESSEIV FIDDGSSDKT
WDLLQQLPVS SSEHQCIRLS RNFGKEAAMT AGLEQARGLA VILLDADLQD PPELIPQMLQ
AWREGFDVVN MKRRKRLGES WFKRLSAAAF YRVINSMAES PVPENVGDFR LISRQVVDSI
NELPERNRFM KGILSWPGFS QTEILFDRDP RHLGETKWNY SKLIGLAMDG ITSFSIKPLR
LATWAGLLTA LSAFTYGGWV FLKTVLWGGE VAGYPSLMIV QVALAGVQLL ALGLIGEYLG
RVFMEVKQRP IYLIREVEQQ QSTRTSVSHA EVGENVRYLE STR
|
|---|
| |