| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0702 |
|---|
| Symbol | |
|---|
| ID | 5612205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 845421 |
|---|
| End bp | 847442 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931546 |
|---|
| Product | beta-lactamase-like protein |
|---|
| Protein accession | YP_001472441 |
|---|
| Protein GI | 157373841 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2015] Alkyl sulfatase and related hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0631521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTATT TCCTTCGTTT AGCGCCTGTT AGTCGTCTTA TCCTTATTAT TGGGTTATTG
CTCACGGGCT GCCAGCCAGA CCCCAATAAT GTCTCGACCG AAGAGAGAGT GCAGCCCGAT
GCTATCGATG CAGATGGTTT TACACCGGCA ACGGCGTATA CCAAGAGTGC GAATGCGGCG
CTCATAGCCG AGCTTCCTTT CGATAATAAA CAGGACTTTG TCGATGCAAA CCGTGGTTTT
ATCGCTAAGC TCCCTACCTT AAGCGTCGAG GGCGATGAGG GGGATACCAT CTGGGATATG
CCCGCCTATG ACTTCATCGA TGGCGGGGCA CCTGAGAGTG TCAATCCAAG CCTGTGGCGA
CAAGCCAGCC TAAACAATAT TCAGGGGTTA TTCGAGGTGA CCAAGGGGGT CTATCAGATC
CGTGGTTTCG ACCTGGCTAA TATGACTATC ATCGAAGGTA AGAGTGGTTG GATAGTGGTC
GATCCGCTGA CGACGGCCGA AACGGCGAGA GTTGCTCTCG ACTTTGTGAA TAAACAACTG
GGTAACAGGC CCATCTCAGC CATCCTGTTT ACCCACAGCC ATATGGATCA TTTTGGCGGT
GCTTTAGGTC TGTTGGGAGA GCCTGATAAG GCTGAAACGG GCAATATCGA TATCCTGGCA
CCGGCGGGAT TTATGCGTGA GGCAACCAGT GAAAACGTAA TGGCGGGAAC GGCTATGAGT
CGCCGCGCCA TGTACATGTA TGGTAAGCGC CTTCCTAGGA GCGCTCGGGG ACATATCGAC
TCGGGCCTTG GGAAGGAGCC TGCATTCGGC ACTTTCGGTA TTTTGGCGCC GACAATCACG
ATAGAAAAGG ATGAGTCGAG GGTGATCGAT GGCATTAACT TTGAGTTTCA GATTGTCTCC
GGTTCGGAGG CGCCGGCCGA GTTTACCTTC TCTCTGCCCG AGCTTAATGC CTATTGTGGT
GCCGAGCTGG TCTCGAAGAC GATGCATAAC CTCTATACGC TCAGAGGGGC CAAGGTCCGG
GATGCGCTGC AGTGGAGCGA TGCTATCGAT GAGGCACTAA CATACCAGAG AGGAGTCGAG
GTCTATTTTG GTAGCCATCA TTGGCCCATC TGGGGACAAG AGGCTATCGC CGACTTTTTA
GAGAAGCAGC GTGATACCTA TAAATATATT CATGACCAAT CGGTTCGTAT GCTCAATAAG
GGGCTAACCC CGGATGAGAT AGCAGAGCAG ATCCAGATGC CGCCATCACT GTCGACCACA
TTTTCCAGTC GCGGCTATTA TGGCAGTGCC AGGCATAATG CCAAAGCCGT CTATCAGGCC
TATTTAGGTT GGTATGACGC CAACCCGGTG AACCTCAATC CACTGCCCGA TGAGCAATCC
TCCGGTAAAT ATATCGCGTT GATGGGAGGC GCTGATGCCG TGCTTAAGCA TGCCGGTGCA
GCCTTCGATA AGGGAGAGTA CCGCTGGACG GCCGAATTGC TTAATAAGCT GGTTTTTGCC
GACAGTGCCA ATATACAAGC TAAAGAGTTA CTGGCTAAGA CCTATGATCA ATTGGGCTAC
CTGTCTGAAT CTGCCCCCTG GCGAGACGTT TATCTGTCTG CGGCCTATGA GCTGCGCCAT
GGTAGTCCGG ATAAAGGGAT CGAGCTGGCT TCTATGAAAC AGATCTTACT GCGATCGCCG
GTGGAAAATT TTCTACAATC TATGGCGTCA AGAATCATAG GACCCGAAGC CTTTGGTGAG
CGATTTACGC TCAATATCAA TTTTACCGAT CTGGGCGATA ACTATCTGCT TGAGCTTAAG
AATTCGGTGC TGCACCACAG GAAAGCACCA AAGGATCTGA GTGCCGATGC GACACTCAAT
ATCAGCCACG AACTCTTTGT TGAGCTCATC ATAGGCAGTG CGGGAGTATC GGACCTGTTG
TTTTCCGATG AGCTGAATAT TGAGGGAAGT AAGGTCGATT TGGTCAGCTT CCTGACTTTA
CTGGATAAGC CTAAAGGTGT GTTCAATATC GTGACACCTT AG
|
|---|
| Protein sequence | MYYFLRLAPV SRLILIIGLL LTGCQPDPNN VSTEERVQPD AIDADGFTPA TAYTKSANAA
LIAELPFDNK QDFVDANRGF IAKLPTLSVE GDEGDTIWDM PAYDFIDGGA PESVNPSLWR
QASLNNIQGL FEVTKGVYQI RGFDLANMTI IEGKSGWIVV DPLTTAETAR VALDFVNKQL
GNRPISAILF THSHMDHFGG ALGLLGEPDK AETGNIDILA PAGFMREATS ENVMAGTAMS
RRAMYMYGKR LPRSARGHID SGLGKEPAFG TFGILAPTIT IEKDESRVID GINFEFQIVS
GSEAPAEFTF SLPELNAYCG AELVSKTMHN LYTLRGAKVR DALQWSDAID EALTYQRGVE
VYFGSHHWPI WGQEAIADFL EKQRDTYKYI HDQSVRMLNK GLTPDEIAEQ IQMPPSLSTT
FSSRGYYGSA RHNAKAVYQA YLGWYDANPV NLNPLPDEQS SGKYIALMGG ADAVLKHAGA
AFDKGEYRWT AELLNKLVFA DSANIQAKEL LAKTYDQLGY LSESAPWRDV YLSAAYELRH
GSPDKGIELA SMKQILLRSP VENFLQSMAS RIIGPEAFGE RFTLNINFTD LGDNYLLELK
NSVLHHRKAP KDLSADATLN ISHELFVELI IGSAGVSDLL FSDELNIEGS KVDLVSFLTL
LDKPKGVFNI VTP
|
|---|
| |