| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0701 |
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| Symbol | |
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| ID | 5612246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 844287 |
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| End bp | 845324 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931545 |
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| Product | helix-turn-helix-domain-containing protein |
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| Protein accession | YP_001472440 |
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| Protein GI | 157373840 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.311411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTTA TGCAGGGAAC AGCCAAATAC ACGACTATCG CAGCTTGGGC ATCAGCGGTT
GCCAGAGCGT TGAGAGCGTC GGGTGTCGAT CCCGAGAGTG TGTATGAAGA TGCTGGCTTA
TCATTAACTG AAATCGAAAG AGCGCCGGAC TCTCGTATCC CTATAGAAAA TATGACCCTA
TTTTGGGAAG CGGTTGAAAG TGCGACTCAA TCGCCAGCAT TCGGCCTTGC TGTGGGCCGC
TATGCATACC CTATGCACTT CAGATCTTTG GGATTGTTGA TGATGACCTC TGAAACGCTG
GCGCGCGCAT TCGAACGTCT TCCCGATTAC TATGCCCTGG TGAGCAACTC TGCAAGTATA
AAGCTGCAAA GAACGCCGCA GCTGATAGGG TTTACCATCA CACCACTTAA TGGGATCGAG
ATCAGTGAGA TGGCGATAGA TGCATTTTTT GCTACTTTGA TGCACCACGG AGAGTTGATG
ATTGGGCACT CGAATTTCAT TAAAACCGTG GAGCTTATCC GGGAGTCCCC GAAAGATGAA
AGCCCCTGGC AAACTTGTTT CAACTGCCCG GTCTCATTCG AACAGCAAGT GAATTGTCTG
TGGATGGACA GGAGCATGCT TGAGAAGGCG ACTATGATGG CAGATCCTAA GTTGGCCATG
AAGAATGAGC ATGCAGTTCG CCAATATCTG GAAAAGATGC AGGCTTTAAG CTGGCACGAG
AAAACCAGCC AGGCGGTACA TGCCATGCTG GTTGACGGTG AACCTTGTCT GGTTAAGGCG
GCGCAGATCT ATAACTTGAG TGAACGAACC CTGAGTCGTT ATCTCAAGAG TGAGGGCACA
AATTTTCGGA CCATATTGCA GGAGAAGCGT AAGGAGCTGG CGCATTATTA TCTGATCAAT
AGTGAACTGT CGATAACTCA AGTTGCAGAT AAGTTGGGCT ATACCAGCTT GAGTAATTTC
ACCCGCGTAT TTCACCTCTG GTATGGGCTA AGCCCGAGTC TGTATCGCCT GCAGAGCCAT
TCATCTGCAA ACTTATAG
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| Protein sequence | MNLMQGTAKY TTIAAWASAV ARALRASGVD PESVYEDAGL SLTEIERAPD SRIPIENMTL
FWEAVESATQ SPAFGLAVGR YAYPMHFRSL GLLMMTSETL ARAFERLPDY YALVSNSASI
KLQRTPQLIG FTITPLNGIE ISEMAIDAFF ATLMHHGELM IGHSNFIKTV ELIRESPKDE
SPWQTCFNCP VSFEQQVNCL WMDRSMLEKA TMMADPKLAM KNEHAVRQYL EKMQALSWHE
KTSQAVHAML VDGEPCLVKA AQIYNLSERT LSRYLKSEGT NFRTILQEKR KELAHYYLIN
SELSITQVAD KLGYTSLSNF TRVFHLWYGL SPSLYRLQSH SSANL
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