| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0683 |
|---|
| Symbol | |
|---|
| ID | 5612511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 824164 |
|---|
| End bp | 824667 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931527 |
|---|
| Product | transcriptional regulator, MarR family protein |
|---|
| Protein accession | YP_001472422 |
|---|
| Protein GI | 157373822 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.157665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AGATAGATGG AATAGATAGA GTCGTCGCTC AGTGGGGCAA GGAGAAACCA
GAGCTGGATA CTCTGCCGAT GGAGTTGATA GGCAGACTGA TGCGTATAGG TAAGCACCTT
GAAACGCAAA TTGCGGTATT CCATAAGCGT TACGGTCTGA CGCTGGGCGA ATTTGATGTG
TTAGCGACGC TGAGACGGGC GGGTGGAGAT CACTGCTTAA CTCCATCTGA GTTAATTGCC
ACCATGATGC TGACGTCCGG TGCCATGACA AACCGTCTGG ATCGCCTCGA AAGTAAGGGG
CAGATTGTCA GAGTGCACAG CCAGAAGGAC AGGCGAAGCG TGTCGGTGGC TTTAACCGGA
CAAGGGTTGG CGCTTATCGA TGAACTGATA GTAGAGCATG TGAACATTCA GCAAGGGTTG
ATGGCATCGC TTGGTGATGC CGATAAACCT CTGCTCAACG GACTGTTGAA AATCTGGTTG
GCTGAGTTCG AGTCACAGGG GTAA
|
|---|
| Protein sequence | MNKEIDGIDR VVAQWGKEKP ELDTLPMELI GRLMRIGKHL ETQIAVFHKR YGLTLGEFDV
LATLRRAGGD HCLTPSELIA TMMLTSGAMT NRLDRLESKG QIVRVHSQKD RRSVSVALTG
QGLALIDELI VEHVNIQQGL MASLGDADKP LLNGLLKIWL AEFESQG
|
|---|
| |