| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0648 |
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| Symbol | |
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| ID | 5613738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 785914 |
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| End bp | 787092 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640931493 |
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| Product | ATPase central domain-containing protein |
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| Protein accession | YP_001472388 |
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| Protein GI | 157373788 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1222] ATP-dependent 26S proteasome regulatory subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACGAGT TATTACTACA AATAAAGGCA CTCACCAATG GTGACCCTTT GTTGACGGCT
GTAATTGTTG GAATATTGAC ATTAACGTTA AGTGGACTCG TGGGCTACAT GCTAAAAGGT
ATCTTCGCGA AGATGTTAAG CTGGATCAGT AGCTTGCTGT TTATACGGCT GACTATAGAC
GATAGCCATC AGGCGCGCAC AGAGGTATTC AATAAACTGT CCTTTTTGAT AAGTAATACT
ACAATTCCGC TATTTTCACG CTCTATCTCT GAGGCTGTGT ATTATGACTA TAGTGCGAGT
TACGACGGTC GTATCAGTGT TAAGTCTATC GGCTACGGTA TGCACGTGTT TAAATACGAT
GGTTGCTTGA TGTTGGCTAC TCGATCTAAG GTCGATAGCA CGATGCCATA CGACACTATT
ACTATAACTG CACCATGGTG GTCAAAAGAT AAACTGCATA GCTTTTTAGA AGATACTCGT
GGAGACATAT CTACTGATCC AAGAGTTAAT ATTTTCGAGG ATACAGAATG GTGTCGCTAT
GGCACATTGA AATCATCAGG GTTTAGTGGA TTAGTACTAG ATGAAGGGTT TAAGCAGGAG
TTCCTTCGTG AAGTCGATAA CTTCGCAAGT AGAGGGAAAT CGGTTGTAAG TAAGCTAACC
ATACTGTTAC ATGGACAAAC GGGTACCGGT AAGACTGGTA TAGCTAGAGC CTTAGCTGTT
GAGTATTGTC GCGATCTATA CATACTTAAT CTTTCTACTG TAAATGATGC CACTGTTCAT
AAGGCTATTA GAAAGGTACC GCCTGGAGCT ATGCTGTTAA TAGAGGACTG TGACTGTGTA
AAGGCTACGG TATCGCGTGC TGCTGAAAGT AATGCAGATA ATCCACCGCT AACCTTAGGT
GGCGTTCTAA ACGCGCTAGA CGGAGTCATT CCTCTTGATG ACTGCCTTGT CATAATGACC
ACAAACCATC TTGAGAGTCT TGACCCTGCG TTGGTACGTA AAGGTCGTGT AGATGTCAGT
ATTGAAGTAC CGCTTATAAG TGCAAAACAA ATCAATAAAG ACTATCTGGA CCGTTTTGGC
GCAGTTATCA ATAGAACTGA ACCTATGTTA GGTTGCGAAG TATATGAACT CCATCGTAGA
GCCAGCTTAA GATATAGTGT GTGTTGTAAG CCTCTGTAA
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| Protein sequence | MNELLLQIKA LTNGDPLLTA VIVGILTLTL SGLVGYMLKG IFAKMLSWIS SLLFIRLTID
DSHQARTEVF NKLSFLISNT TIPLFSRSIS EAVYYDYSAS YDGRISVKSI GYGMHVFKYD
GCLMLATRSK VDSTMPYDTI TITAPWWSKD KLHSFLEDTR GDISTDPRVN IFEDTEWCRY
GTLKSSGFSG LVLDEGFKQE FLREVDNFAS RGKSVVSKLT ILLHGQTGTG KTGIARALAV
EYCRDLYILN LSTVNDATVH KAIRKVPPGA MLLIEDCDCV KATVSRAAES NADNPPLTLG
GVLNALDGVI PLDDCLVIMT TNHLESLDPA LVRKGRVDVS IEVPLISAKQ INKDYLDRFG
AVINRTEPML GCEVYELHRR ASLRYSVCCK PL
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