| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0639 |
|---|
| Symbol | |
|---|
| ID | 5613756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 776276 |
|---|
| End bp | 776932 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640931484 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472379 |
|---|
| Protein GI | 157373779 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.487238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCTA CAAACCAAAC TTTCATCGAT AGCAATTTTC GTGAAGACGA TCTGCAGGAT
GCGATTTTTG AGCGCTGCGA GTTTTACCGC TGTGACTTCA GCCGCGCCGA TCTCACCGAT
GCCAGCTTCA TCAACTGCAA GTTTATCGAG CAGGGCGAAA GCCAAGCCTG TCATTTCAAC
TACGCCACCT TAACCAATGC GAGTTTCAAG CACTGCAACT TGAGCATGGC GCTTTTCACC
GGCGCCAAAT GCTTCGGCAT CGAGTTTAGA GAGTGCAACC TGCAAGGCGC CGACTTCGGT
AGAGCCAGCT TTGCCAATCA CATCACTCAC AAGACCTTCT TCTGCTCCGC CTATATCACC
GCCTGTAATC TGGCCTATGC CAACCTCGAG AGCGCCTTGC TGGAAAAGTG TGAGCTGATG
GACAACCGCT GGCATGGCGC CACGCTTATC GGTGCATCTA TGAAGGGCTC AGATCTCAGT
GGCGGCGAAT TTTCATCATC CCAATGGGGC ACCTTCGAAC TCGAGGGCTG TAATCTATGC
CGGGTTGAAC TGGAGGGGCT GGATCCCCGT AATGTAAAAC TCGAGGGAGT CATGATAAAC
CAATGGCAAC AGGAACAACT GCTGAGTCCA TTAGGGATTA TCGTCACACC GGAATAG
|
|---|
| Protein sequence | MQATNQTFID SNFREDDLQD AIFERCEFYR CDFSRADLTD ASFINCKFIE QGESQACHFN
YATLTNASFK HCNLSMALFT GAKCFGIEFR ECNLQGADFG RASFANHITH KTFFCSAYIT
ACNLAYANLE SALLEKCELM DNRWHGATLI GASMKGSDLS GGEFSSSQWG TFELEGCNLC
RVELEGLDPR NVKLEGVMIN QWQQEQLLSP LGIIVTPE
|
|---|
| |