| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0630 |
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| Symbol | |
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| ID | 5609991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 769654 |
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| End bp | 770748 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931475 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001472370 |
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| Protein GI | 157373770 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCTC GCTCTATGAA GCATCTATCG AAAACACTCA TCATCGTACT AACCACAGCC
ATTATGGTCG GCTGCAGCGC AGAGTCTACC GAGGTTGCCC CGCAACCGAT AAGACCGGTG
AAGTTGTTGG AGGTTACTGA TGTTAATGCC GCTTCTATCC GTGACTTCCC GGCAAAAATA
GCCGCCACAA AGCAGGCTGA CTTGAGCTTT AGAGTATCTG GCCAGCTCAT TGACTTTACC
CTGGTCGAAG GTCAGCAAGT CAAAAAAGGG ACAAGTTTAG CGCGCCTGGA TGACAGAGAT
GCCCGCAACA CCTTGCTTAA TCGCGAAGCC GATCATGAGC TTGCCACCGC TGACTATAAG
CGTAAGGGTG AACTGCTGCG CCGTCAGCTG ATCTCTCCAG CAGAACACGA TCTTGCTAAG
GCTCAGCTAA AGTCTGCCAC CGCGGCCCTT GCCAATGCCC GAGACCAGTT AAGCTACACC
CGTTTGATCG CTCCCTATGA TGGCACAATC GCTAAAATAT CTATGGATAA TTTCCAGATG
GTTCAGGCAA ATCAGTCTGT TCTGGTCTTA CAGAAAGGTA ATGATATCGA TGTGGTCATT
CAGGTACCCG AGTCTATGGC AAGCCAAGCC ATCACATTTA ACCCGAATGC CAAATTTCAG
CCTCAGGTTC GTTTCAGTAC TCAGCCGGAT CAAAGCTACA AGGTCAGCCT GAAAGAGCAC
GCCACCCAAG TTACTCCTGG CACCCAGAGC TATGAAGTGG TGTATACACT GCCGAGACCT
ACACAAATTA ACGTACTTCC GGGTATGAGC GCGGAGCTGA CGTTAGACCT CTCATCAGAT
AATGAACTTC TCAAAACCGT TGTTCCGGCA AGTGCCGTAA TGAAGCGTGA TCTCGATGGT
CAGAATATCG TCTGGCTCTA CCATGCCGAT ACCGGCAAAG TGATGCCTCA AATCGTCACC
TTAGGCCGCG TCACAACAGA TGGCATCGAG ATTTTAGAGG GCTTAACCTT AGGCGATCAA
TTTGTTGTCG CTGGCGTGCA ATACCTCTCG CCTGAACAAA ACGTTAAACC ACTTCGCTGG
CAACGCGGGG TGTAA
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| Protein sequence | MEPRSMKHLS KTLIIVLTTA IMVGCSAEST EVAPQPIRPV KLLEVTDVNA ASIRDFPAKI
AATKQADLSF RVSGQLIDFT LVEGQQVKKG TSLARLDDRD ARNTLLNREA DHELATADYK
RKGELLRRQL ISPAEHDLAK AQLKSATAAL ANARDQLSYT RLIAPYDGTI AKISMDNFQM
VQANQSVLVL QKGNDIDVVI QVPESMASQA ITFNPNAKFQ PQVRFSTQPD QSYKVSLKEH
ATQVTPGTQS YEVVYTLPRP TQINVLPGMS AELTLDLSSD NELLKTVVPA SAVMKRDLDG
QNIVWLYHAD TGKVMPQIVT LGRVTTDGIE ILEGLTLGDQ FVVAGVQYLS PEQNVKPLRW
QRGV
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