| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0627 |
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| Symbol | |
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| ID | 5613039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 759500 |
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| End bp | 763102 |
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| Gene Length | 3603 bp |
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| Protein Length | 1200 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931472 |
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| Product | histidine kinase |
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| Protein accession | YP_001472367 |
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| Protein GI | 157373767 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTGG TCACGGCATG GTTTTTCTTC GAGCGAGAAA AAACGCACCT GATGGAGATG
AGAGAGGAGC AAGTTGAACG TCATGTACGT CAAATTGACC TGCTACTCGA GTCCAGTATC
CGCGCGGTGA AGAGTCTCAG GAATGTGGCG GTGGATCATT TGCGACTAGG TGAGCTCGTT
CGTAGTGACA GGCTGCCTCA GTATGAAAAA TTCAATGAAA GCGGACAGTT TTTCACCTTA
GAGCCCAGTT ATGCCAAAAC CGGTGAACCT TTTACCAACA TGGGGCGTAT CACCGGCACA
GGTTCGCTCA ATGGCCGCAG CGACAAGTTT TATCAAGAAC TGGAGATGCT ATTTGAGTTG
TCACTCTCCT TTCCGGTTGC CAAAGAAGCG GCCCCCAAAG CCTCCTCGAT CTATTACATC
TCTAAGCGCC GCATCATGTC CTATTTCCCC TGGCCATCGG ATGAGCAAAG GTTCAGGGAA
GAGCTACTCA ACAAGAACCA GTTTCAGTTA GCTACGCCGG CCATGAACCC ACAGCGAAGT
GTGTTCTGGA GCCCGGCTTA TGTCGATCCT ACCGATAAGG GCTTGTTGAC GACAATAGGT
GTACCCATCT ATCTTCAGGA TGAGTTTATC GGCTCTATTA ACCTGGATAT GACGCTGGCA
TCACTGTCCA AACAGATTCG GCTCTATTTT AAGATGCCGG GTACGGTTAT CTTGCTGGAT
CAGAATAACA ATATTCTCTC CCATAACGGT AATGATGCGA CCAATATCAG CCGGGTGTTT
CATATCAGTC AGAAGATCCC GTCCGAACTG CACTCGGTAC CGGAATCTGA ACTGTTCGAT
GCCCATGAGG GGATCATTCG CAACGGTTAC TATATCCATT CGGTTGCCCT GCAAAATACT
CCCTGGCGAT TACTCTACCT GCAGGATGAA GATGAACTCT TCATGGATTC CTGGGAAAAA
CTGGAGCTGA CCTTTATCTT GGTAGTGTTG GCCCTGTCGA TCTTGGTCAC CATAGTTCAC
TGGCAAACGC GGCGCTCTTT CGTGAACCCC GCTTCCCGCT TGCTGACTCA CCTCGAAGGT
TGCTCCCAAG AGCCGAGAAA GCCACCGGAG ACTATCACTT TGGGTTGGGA GCCCTGGTTC
CAGCTGGTGA GTCGCATTTT CGAAGAAAAT CAGCAGTACA CACGACACCT GGCGGAGCAA
AATCGTCGTC TGGATAAGCT GGTGGCACGT CGCACCGAGA GGCTAAAAGA GACCACCGAG
CGTCGTGAAC GGGAATACGC ACTACTTCGT TCACTGTTCG ACTCCATTCC AGAAGCGATT
GTATTTAAAG ATAAAGAGGG CAAGTACTTA GGCTGCAATA AGTCTGCCGA GCGTATGCTG
GGTTACACCG AGAGTGAGAT GATAGGGCAG GAGAGCATTA GGCTGACTAC CGATGAGCAA
TCGGTGCGGA TTAAGGCTGA AGATGAGCGA GTGCTGTCAG AACGGACGCC GCTACGTTAT
CAGGAGAAAG TCGAGCTTGC GGGCAAGCCG GTACTGCTCG ATACATTGAA ATTGCCTTTC
TATAATCGCC GTGGCGAACT GCTGGGCTTG ATTGCCGTAT GGCGTGATGT GACCCGAGAA
TATGAGTCGG CCGAACAACT CAGATTATCT GAAGAGCGTT ATCATCTGGC CATGGATGCG
GTAGAAGATG GTTTATGGGA CTGGTACTTA GACTCTGAGC AGATCATCTG TAATCCGGCC
TATTACTCTA TGCTGGGCTA CAAGAGTAAT GAGTTTCCCG CGCTGGTTTC CACCTTAGAT
GACTTGATTC ATCCTGATGA CCGTATCCGT GTCGAAGAGT ATCGCGACCA GTACCTGTCG
GATCCTATCG GTGCCTACGA TATCGAGTTC AGAATGCGTG GTAAGAGTGG TCATTACCAC
TGGGTTCTCT CTCGAGGTCG AGTGGTCGAG TTTACTGTCG ATAACCAACC TAAACGTATG
GTCGGAACCC ATAAAGACAT TACCCGCCAT AAGAGTAACG AAGTGGCCAT GCTGGAAGCC
AAGCAAGATG CCGAATCCGC TAACCTCTAT AAGAGTGAAT TCCTGGCTAA TATGAGTCAT
GAAATTCGTA CACCGATGAA CGCTATCATA GGTATGTTAC AGCTCGCTCA GCGCACATCA
CTGACGCCTC AACAGGAAGA TTATCTGGAT AAAGCCGGAT TTTCGGCTCA GTCACTGCTG
CGAATTATTA ACGATATTCT CGATTTCTCA AAAATTGAAG CCGGTAAGTT AGAGTTGGAA
AGGGTGGGGT TCCCGCTGGA CAAGGTGCTG GATCATGCGC TCGATCTTAA TGCCTTAAAA
GCACAGCAAA AAGGCGTTGA ACTGCTGCTC TATGCGCCAG TGACGGCTGG ACTGATCCTG
GAAGGCGATC CCTTGCGTCT CGGACAGGTC TTGATCAACA TGCTCTCTAA CGCGGTTAAG
TTTACCCAAA GTGGTGAGAT TGAGCTTGGC TGTGAAGATG TGGGTGAACG CGACCATAGA
ATCACCCTGA AGTTTTGGGT ACGCGATACC GGTATCGGTA TCAGCAAAGA GCAGCAAGCC
AGCCTGTTCG ATGCCTTCGC TCAGGCCGAT GGCTCAACCA CCAGAAAGTA TGGCGGCACG
GGGCTGGGTC TCTCTATCAG TAAACACCTG GTGTCTATGA TGGGCGGCAA GATGCAGGTT
CAGAGTGAGA TGGGGGTTGG AAGTACCTTC AGCTTTACCA TTAGCTTCGA GATCGCCGAA
GAAGCTGAAA TTAAGCCTAT GATCGTACCT GAAAAATTAG GCAATCTTAA GACCTTAGTG
GTGGATGATA ATCCGACTGC ACTGCAAATT TACTCTTCAG TCATGCAAGA TTTCCACTTC
GAGGTGGACA CGGCGGCGAG TGGTTCTGAG GCTATCTACA AGCTAGGCAG ATCTTCGGTG
GATCTGTTAC TGCTCGATTG GATGATGCCG GAGATGGACG GTATCGCCGT GATAGATGAG
CTGGATCGTA TGGTTGCCGA TGGTCGATTA GATAAGCGTC CAATCGTCAT CATGATGACG
GCGTACGCGG CCGAGCCACT GCAAAAAGAT GTCGAGAAAT CGAATATCTT CGCCATGTTG
CAAAAGCCTT TCAAAGCATC TGCACTATTC GATGAGATTA TCTCGGCCTT TGCCGATGAA
CCTAAACTTA ACCCGGTCGT TGAGTTGCCG GTAGAGACGG TGGATGAAGA CGCCGGTAGG
GTCTTGTTAG TCGAAGATAA CTTTATTAAC CAGCAGGTGG CCACAGAGCT ACTCAAGAGC
GCGGGTTATG AGGTGGATGT GGCCGAAAAT GGTCAGATAG CTATCGATAT GATCGAAGAG
AAAGAGTTCG ATGCTGTACT CATGGATATT CAGATGCCGG TGATGGACGG ATTGACGGCA
ACGAAAGAGC TGCGTAAGCG CTATAGTTCG ACAGAGCTAC CTATTATCGC CATGACGGCA
CATGCCATGT CAGGCGACAG GGAGAAGAGT TTGTCGGCCG GAATGAATGC GCACATAACT
AAACCCATAG TGCTTAATGA GTTATTTGAT ACATTAAGTC ATTGGATTAA TCATAAAGAC
TAA
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| Protein sequence | MALVTAWFFF EREKTHLMEM REEQVERHVR QIDLLLESSI RAVKSLRNVA VDHLRLGELV
RSDRLPQYEK FNESGQFFTL EPSYAKTGEP FTNMGRITGT GSLNGRSDKF YQELEMLFEL
SLSFPVAKEA APKASSIYYI SKRRIMSYFP WPSDEQRFRE ELLNKNQFQL ATPAMNPQRS
VFWSPAYVDP TDKGLLTTIG VPIYLQDEFI GSINLDMTLA SLSKQIRLYF KMPGTVILLD
QNNNILSHNG NDATNISRVF HISQKIPSEL HSVPESELFD AHEGIIRNGY YIHSVALQNT
PWRLLYLQDE DELFMDSWEK LELTFILVVL ALSILVTIVH WQTRRSFVNP ASRLLTHLEG
CSQEPRKPPE TITLGWEPWF QLVSRIFEEN QQYTRHLAEQ NRRLDKLVAR RTERLKETTE
RREREYALLR SLFDSIPEAI VFKDKEGKYL GCNKSAERML GYTESEMIGQ ESIRLTTDEQ
SVRIKAEDER VLSERTPLRY QEKVELAGKP VLLDTLKLPF YNRRGELLGL IAVWRDVTRE
YESAEQLRLS EERYHLAMDA VEDGLWDWYL DSEQIICNPA YYSMLGYKSN EFPALVSTLD
DLIHPDDRIR VEEYRDQYLS DPIGAYDIEF RMRGKSGHYH WVLSRGRVVE FTVDNQPKRM
VGTHKDITRH KSNEVAMLEA KQDAESANLY KSEFLANMSH EIRTPMNAII GMLQLAQRTS
LTPQQEDYLD KAGFSAQSLL RIINDILDFS KIEAGKLELE RVGFPLDKVL DHALDLNALK
AQQKGVELLL YAPVTAGLIL EGDPLRLGQV LINMLSNAVK FTQSGEIELG CEDVGERDHR
ITLKFWVRDT GIGISKEQQA SLFDAFAQAD GSTTRKYGGT GLGLSISKHL VSMMGGKMQV
QSEMGVGSTF SFTISFEIAE EAEIKPMIVP EKLGNLKTLV VDDNPTALQI YSSVMQDFHF
EVDTAASGSE AIYKLGRSSV DLLLLDWMMP EMDGIAVIDE LDRMVADGRL DKRPIVIMMT
AYAAEPLQKD VEKSNIFAML QKPFKASALF DEIISAFADE PKLNPVVELP VETVDEDAGR
VLLVEDNFIN QQVATELLKS AGYEVDVAEN GQIAIDMIEE KEFDAVLMDI QMPVMDGLTA
TKELRKRYSS TELPIIAMTA HAMSGDREKS LSAGMNAHIT KPIVLNELFD TLSHWINHKD
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