| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0622 |
|---|
| Symbol | |
|---|
| ID | 5610233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 750391 |
|---|
| End bp | 751386 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931467 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001472362 |
|---|
| Protein GI | 157373762 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1776] Chemotaxis protein CheC, inhibitor of MCP methylation
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCC CAGTACTCAT ATGCGATGAC TCTGCACTGG CCAGAAAGCA GATGGCCCGA
ACACTTCCCA AAGAGTGGGA TGTCGAAATA ACCTTTGCCA ACAATGGTGC CGAAGGCATT
GAGGCTATTC GTGCCGGTAA AGGCGAAGTT GTTTTTCTCG ACCTTAATAT GCCGGTAATG
GATGGCTATG AGGTGCTGCA AACCATCCAG CAAGATGATC TTCCAGCCTT GGTGATTGTC
GTTTCCGGCG ATATTCAAAT CAAAGCCCAT GAACGTGTAA AAGCCTTAGG TGCTCTGGAT
TTTATTCAAA AGCCGGTTAG CGCCGATGCC ATCAGTAATA TTCTGCAAGA GTACGGCATT
CTGACTATCG CTCTGGGCGA AGAGACGAAC GAAAGCCCGA TGATAGAAGT CGATCTTAGA
GATGCATGTC AGGAGGTCGC TAATGTCGCT ATGGGACGTG CGGCGGACCT TCTGGCTAAA
CTGCTTGATG TATTTGTACT CTTACCCATT CCCAACGTGA ATGTGCTCGA AGTCAGTGAG
CTAACCATGA CGCTCAAGGC CACCGAAGAG CGCAGCACCG TTTCGGCCCT ATGTCAGGGG
TTTATCGGTG CCGGGGTGGC GGGTGAAGCC CTGTTACTGT TTCATGACTC TTCGTTTAAA
GACATGGCAA AGTTGATGGG GCTGGCGAAC CCCGAAGATA GAAATACCGA AATCGAGGTG
ATGATTGACA CAGGTAACGT CCTTATCGGG GCCTTCTTGA ACGGTATATC TGAACAGCTT
CATATGAAGT TCAGCCAGAG TCACCCTGTC GTACTTGGAC GTCACTGCAC GGTCAATGAC
CTGATCCATG ATAATTCAGA AAAATGGTCC CGCACTCTGG CAATGGAGAT CAATTACCGC
ATCGAAGATC ATGATATCCA ATGCGATCTT CTCTTGTTGT TTACCGAAGA CTCACTACCG
ACGCTTAATT TTAAGCTCGG TTACCTGTTT GAATAA
|
|---|
| Protein sequence | MPIPVLICDD SALARKQMAR TLPKEWDVEI TFANNGAEGI EAIRAGKGEV VFLDLNMPVM
DGYEVLQTIQ QDDLPALVIV VSGDIQIKAH ERVKALGALD FIQKPVSADA ISNILQEYGI
LTIALGEETN ESPMIEVDLR DACQEVANVA MGRAADLLAK LLDVFVLLPI PNVNVLEVSE
LTMTLKATEE RSTVSALCQG FIGAGVAGEA LLLFHDSSFK DMAKLMGLAN PEDRNTEIEV
MIDTGNVLIG AFLNGISEQL HMKFSQSHPV VLGRHCTVND LIHDNSEKWS RTLAMEINYR
IEDHDIQCDL LLLFTEDSLP TLNFKLGYLF E
|
|---|
| |