| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0621 |
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| Symbol | |
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| ID | 5610232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 749405 |
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| End bp | 750376 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640931466 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001472361 |
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| Protein GI | 157373761 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATATG ACCAAAGCGC AATGAACGAA CTCCACTGGT TGATAGATAT GGTTCAAACC
ATTGAAGTTG GCTTGGTGGT ATTAGATAGA AATTTTGATA TCCAGCTTTG GAATGGCTTT
ATGGAAAACC ACAGCGGCGT CTCTCCTAAC TCCATCAAGG GCTCTAATCT ATTCGAGCAA
TTTGATTATC TACCGGCTTC TTGGTTAAAA CAGAAGATGG AATCGGTTTT TCTGCTTAAA
AATCGTGCCT TTATCAGCTG GGAGCAGCGC CCCTACGTAT TTAAGTTTAA AAACTACCGC
CCTATCACAG GTAGAGCTGA CTTCATGTAC CAGAATGTCA CTCTATTACC GCTGTCATCA
CTAACCGGAC AGATCACCCA TATCAGTTTG ATCGTTTATG ATGTGACCGA TGTTGCCATC
AATAAATTAC AGCTGAAAGC AGCTAATGAG CGTTTAGAGC ATTTGAGTCA GACCGACGGC
TTAACTCAAC TGCATAACCG TCGCCATTGG CAGATGTGTA TGCAAAAAGA GTTTGACCGA
CATAGTCGTT ACGGCGATAA AACCAGTCTG GTCATGTTTG ATATTGACCA CTTTAAGAAG
ATCAACGACA ACTATGGCCA TTTAGCGGGT GATAAAGTCA TCCAACATAT ATCCCATCTG
CTAAAACAAT CTTTACGTGA AACCGACTGT GCGGGGCGAT ACGGAGGGGA AGAGTTCTCT
GTGGTACTTG CTCATACGTG TGCCAAGGGT GCACTTAACT TCGCAGATAG GTTGAGGAAA
AAAATTGAAA AATCAGAGCT CGTCTTCGAA AAAGAAACGA TAAAAGTCAC GGTGAGTATG
GGGATCAGCG ATATTAATGA TCAGCTTGAA AACAGTGGCC AATGGTTAGC CTACGCCGAT
CGGGCATTGT ACCAAGCCAA AGAGTCGGGC CGAAATAATT GCGTTATTTA CGACCAGGAT
TCTGCTGAAT AG
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| Protein sequence | MSYDQSAMNE LHWLIDMVQT IEVGLVVLDR NFDIQLWNGF MENHSGVSPN SIKGSNLFEQ
FDYLPASWLK QKMESVFLLK NRAFISWEQR PYVFKFKNYR PITGRADFMY QNVTLLPLSS
LTGQITHISL IVYDVTDVAI NKLQLKAANE RLEHLSQTDG LTQLHNRRHW QMCMQKEFDR
HSRYGDKTSL VMFDIDHFKK INDNYGHLAG DKVIQHISHL LKQSLRETDC AGRYGGEEFS
VVLAHTCAKG ALNFADRLRK KIEKSELVFE KETIKVTVSM GISDINDQLE NSGQWLAYAD
RALYQAKESG RNNCVIYDQD SAE
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