Gene Ssed_0621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0621 
Symbol 
ID5610232 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp749405 
End bp750376 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content43% 
IMG OID640931466 
Productdiguanylate cyclase 
Protein accessionYP_001472361 
Protein GI157373761 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATATG ACCAAAGCGC AATGAACGAA CTCCACTGGT TGATAGATAT GGTTCAAACC 
ATTGAAGTTG GCTTGGTGGT ATTAGATAGA AATTTTGATA TCCAGCTTTG GAATGGCTTT
ATGGAAAACC ACAGCGGCGT CTCTCCTAAC TCCATCAAGG GCTCTAATCT ATTCGAGCAA
TTTGATTATC TACCGGCTTC TTGGTTAAAA CAGAAGATGG AATCGGTTTT TCTGCTTAAA
AATCGTGCCT TTATCAGCTG GGAGCAGCGC CCCTACGTAT TTAAGTTTAA AAACTACCGC
CCTATCACAG GTAGAGCTGA CTTCATGTAC CAGAATGTCA CTCTATTACC GCTGTCATCA
CTAACCGGAC AGATCACCCA TATCAGTTTG ATCGTTTATG ATGTGACCGA TGTTGCCATC
AATAAATTAC AGCTGAAAGC AGCTAATGAG CGTTTAGAGC ATTTGAGTCA GACCGACGGC
TTAACTCAAC TGCATAACCG TCGCCATTGG CAGATGTGTA TGCAAAAAGA GTTTGACCGA
CATAGTCGTT ACGGCGATAA AACCAGTCTG GTCATGTTTG ATATTGACCA CTTTAAGAAG
ATCAACGACA ACTATGGCCA TTTAGCGGGT GATAAAGTCA TCCAACATAT ATCCCATCTG
CTAAAACAAT CTTTACGTGA AACCGACTGT GCGGGGCGAT ACGGAGGGGA AGAGTTCTCT
GTGGTACTTG CTCATACGTG TGCCAAGGGT GCACTTAACT TCGCAGATAG GTTGAGGAAA
AAAATTGAAA AATCAGAGCT CGTCTTCGAA AAAGAAACGA TAAAAGTCAC GGTGAGTATG
GGGATCAGCG ATATTAATGA TCAGCTTGAA AACAGTGGCC AATGGTTAGC CTACGCCGAT
CGGGCATTGT ACCAAGCCAA AGAGTCGGGC CGAAATAATT GCGTTATTTA CGACCAGGAT
TCTGCTGAAT AG
 
Protein sequence
MSYDQSAMNE LHWLIDMVQT IEVGLVVLDR NFDIQLWNGF MENHSGVSPN SIKGSNLFEQ 
FDYLPASWLK QKMESVFLLK NRAFISWEQR PYVFKFKNYR PITGRADFMY QNVTLLPLSS
LTGQITHISL IVYDVTDVAI NKLQLKAANE RLEHLSQTDG LTQLHNRRHW QMCMQKEFDR
HSRYGDKTSL VMFDIDHFKK INDNYGHLAG DKVIQHISHL LKQSLRETDC AGRYGGEEFS
VVLAHTCAKG ALNFADRLRK KIEKSELVFE KETIKVTVSM GISDINDQLE NSGQWLAYAD
RALYQAKESG RNNCVIYDQD SAE