| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0616 |
|---|
| Symbol | |
|---|
| ID | 5610037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 744827 |
|---|
| End bp | 746014 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931461 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472356 |
|---|
| Protein GI | 157373756 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000317994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTT TAAATAATCG CATCACATGC GTGGCCGCCG CGTGCGCCCT GTTTTCGACT
TCAGCTTTTG CACAGGACCC ATCACTGAGC AACCCTGCGA TCAGTGCCGT CCTCGATGGC
TACTATCAAA ACACCGAGCG TCCTATGGCG GAGCGTGTTG AAGGGTTTGG CTTAGGGCAT
ACCGAGCTGG CGATGAGCGC CAACATCGAT GATATGTTTT ATGGCAAATT GACCGCTGTG
GTTGAGATGC ATGAGGGAGA AACGGAACTG GGCTTAGAAG AGGCCTTCAT TCAGACTCTC
GCTATGCCAG GCGGCTTCTC TGTTCGAGCG GGTCGATTCC TCTCTGATGT GGGTTATCTC
AATAATCAAC ATGTACATAC CGATGCCTTT TCCGATCGAC CGGCAGCCTA CCGAGCATTC
CTGGGCAGCC ACTATTTTGA TGACGGTGTT CGTCTAACCT ACGTCGCGCC GACGGATATC
TATTGGGCGA TGGGGATCGA AGCCTTCAAA GGGGACAGCA TGCGCGCCGT CGATGAACAC
GGCGAGCGTG AATTTGAAGA GTTGGGCATC TATACTGCTT ATACCAAGTT AGGTGGAGAT
ATCGGTGTTA ACGGTTCCTG GCAGGCTGGC CTGAGCTATA TGCGAAACGA GAATGGCCGC
ATGACTGCCG ATGAACATGA GGATCACGCT GAGCTTGAGG ATGATGACCA TGGTCATGAC
CACAGCCACA GTGCGAACTA TACCGGTGAG AATACCTATA TTGCCGATTT CGTCTATAAA
TGGGCGCCGA ATGGCAACTA TAAATATCAG CACCTTACTG TAAGTGGTGA ATATTTTAAG
GTGACGGACT TCACTCCGTT AGCTCTCGAA GATGAGCACC TGAGTGAGCA CGGTGTCGAT
GATCAGCAGG GTTGGTATCT CAGCGGTGTT TACCAGTTTT CTCCTAACTG GTCAGCGGGT
TTACGTTATG GTGAAGTCGA CACTCAGGAG ATGCATGGCG ATCACTTCCA TGGTCAGAAA
CTGAAAGAGA GTGAGGTCAG CCTGGCCTGG CATCATAGCC ACTTCTCTAC AGTGCGTCTG
CAGTACACTA ACCAGAAAGG CACTAATTTC GACGGTATCG AAGATGATAA CGTCATCACT
CTTCAATATG TTATGACTCT GGGGGCTCAC GGTGCGCATC AATTCTAA
|
|---|
| Protein sequence | MTVLNNRITC VAAACALFST SAFAQDPSLS NPAISAVLDG YYQNTERPMA ERVEGFGLGH
TELAMSANID DMFYGKLTAV VEMHEGETEL GLEEAFIQTL AMPGGFSVRA GRFLSDVGYL
NNQHVHTDAF SDRPAAYRAF LGSHYFDDGV RLTYVAPTDI YWAMGIEAFK GDSMRAVDEH
GEREFEELGI YTAYTKLGGD IGVNGSWQAG LSYMRNENGR MTADEHEDHA ELEDDDHGHD
HSHSANYTGE NTYIADFVYK WAPNGNYKYQ HLTVSGEYFK VTDFTPLALE DEHLSEHGVD
DQQGWYLSGV YQFSPNWSAG LRYGEVDTQE MHGDHFHGQK LKESEVSLAW HHSHFSTVRL
QYTNQKGTNF DGIEDDNVIT LQYVMTLGAH GAHQF
|
|---|
| |