Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0613 |
Symbol | |
ID | 5613127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 741683 |
End bp | 743326 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931458 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001472353 |
Protein GI | 157373753 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000873032 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACCGCA TACTCTCTCT GGTGATGCTC ACAATAATCG GGCTCAGCGG CATGCCTTCG CAAGCGCAAA CCCCAACACC ACCCCTAACC GAGCCCTCGA TTGAAACCAC GGCAGAAGCC GGTGAACTCT CTTCACTGCA GGATTCGATC ACCCTAGACG TCAACCGTCT CAAGCTGACG AAGGGGGAGT TAACCAGCTT CACCGAATAC AGAATCAAAA AAAATGCGCA GTTACTGCAC CTCAAGCTCC AGGAGTTGAT GGATGAGACC CCTCTAAACA GCAAACTATT ACTTCCGCTG GTTCGGGAGC ATCTGGACTT CATCAATCGG GTAGATATTT ATTATACAGA CGACATTAAA CAGCTGAGAA GTGAACTTGG TAAAGATAAT GACGCCGCGA TCATGATGCA GCTATCGCTC AGAGAGAGAG AGCGTGATGC GCAATTGGAA GCAAAACTCG ATACCCTCAA ATGGGCAGAA AAGTTAGAGA TAGATACAGG CAATCAGGCT GACCTCCTCA TCAAGACATT AGTTAAGCGT GCGGATAAGC TCAATAGCCT GGTTCAATAC ACGCAAGAGA AGCTACAAGC CGCAGTGAGT GAAGCAAGTC TTGCCGGCAG TGATGTAACC TCGGAGCAGA CTCTGCTGGT CACTCAGCTT AACGAGAGAC TGGCTCAAAG CAGCTCCAGT TTAGCCGTCG CCATCGGTCT GCTCGACATA GTAGGCCAAG ACACCGCCGA GTTAAAACAG ACGCTTTTCA GTACTTCCGG CGACATCACT CAAGATGTGT TGAACATCGA TGTCGCATCG AGCCTGATTG AGCAGTGGTT TACCGCTGCC AAGACCCAAG CCATAGACAA TGGACCCGGT GTCATATTTA AGCTGTTTAT CTTCGTCTTG ATTCTGTTTG TCGCCAACCT GGCGGGCAAA CTGGCTCAGA AAATTGTCAA GAAAACGGTG AGCAACTCCA AGCTGCAATT CAGCCTTCTT CTGCAGGAGT TCTTTATCTC ACTGTCGGGT AAGGCCGTAT TCACCTTAGG TGTACTGATT GCCCTTTCTC AGCTGGGGAT TGAGCTCGGC CCTCTATTAG CCGGTTTCGG TGTTGCCGGT GTGATTATTG GTTTTGCACT TCAGGATACG CTGTCAAACT TTGCCTCGGG GATGATGATT CTGATCTATC GCCCTTATGA TGTCGGCGAT CTGATCAATG CTGCAGGCGT GACGGGTAAG GTAAGTCATA TGAGCCTGGT CTCGACCACA ATTAAGACCC TAGATAACCA GAGATTAATT ATTCCGAATA ATAAGATCTG GGGCGACACC ATCAACAACA TCACTGTTGA GCATCAAAGA CGTGTGGATA TGACTTTTGG CATAGGTTAC GGCGATGATA TTGAAAAAGC TGAGCGAGTA ATGAATGCCA TCTTGCTCGA ACACCCTAAG GTACTTAAAA ACCCAGAGCC TATCGTTAAG TTACATACAT TAGGTGAGTC TTCGGTAGAT TTCGTTGTAC GCCCTTGGGC TAAGCCGGAA GATTATTGGG AAGTGTATTG GGACGTCACC CGCACTGTGA AGATGCGCTT CGATGCAGAG AACATCAGCA TTCCATTCCC GCAGCGCGAT GTTCATATTT ATCAATCAGA GTAA
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Protein sequence | MYRILSLVML TIIGLSGMPS QAQTPTPPLT EPSIETTAEA GELSSLQDSI TLDVNRLKLT KGELTSFTEY RIKKNAQLLH LKLQELMDET PLNSKLLLPL VREHLDFINR VDIYYTDDIK QLRSELGKDN DAAIMMQLSL RERERDAQLE AKLDTLKWAE KLEIDTGNQA DLLIKTLVKR ADKLNSLVQY TQEKLQAAVS EASLAGSDVT SEQTLLVTQL NERLAQSSSS LAVAIGLLDI VGQDTAELKQ TLFSTSGDIT QDVLNIDVAS SLIEQWFTAA KTQAIDNGPG VIFKLFIFVL ILFVANLAGK LAQKIVKKTV SNSKLQFSLL LQEFFISLSG KAVFTLGVLI ALSQLGIELG PLLAGFGVAG VIIGFALQDT LSNFASGMMI LIYRPYDVGD LINAAGVTGK VSHMSLVSTT IKTLDNQRLI IPNNKIWGDT INNITVEHQR RVDMTFGIGY GDDIEKAERV MNAILLEHPK VLKNPEPIVK LHTLGESSVD FVVRPWAKPE DYWEVYWDVT RTVKMRFDAE NISIPFPQRD VHIYQSE
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