Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0610 |
Symbol | |
ID | 5613124 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 737723 |
End bp | 738352 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931455 |
Product | hypothetical protein |
Protein accession | YP_001472350 |
Protein GI | 157373750 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000882813 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGCTG TCGCGATACC TCCGCCACGA ATTGGCTTTG AGGGGATCCC CAGAAACTGG GACAAAAAAC ATAGTAAAGT GATCGCCAGG GTCGACCCCG GCGCCTTTTA TATTACTTCC CACGATGAAT ATATATTTAC CCGGCTCGGG TCCTGTGTGG CGGCCTGTAT CTGGGATCCA CTCTTAGGTA TTGGCGGTTT AAACCACTTC CTTCTCCCGG AAAGAGAGCT CAATGAAGAT TGGCACCAAT TAACCAGTTA CTCCTGTCGC TACGGGAATT TAGCGATGGA GCAGTTAATT AATGGCATCT TAACCTCGGG TGGTCAACGC CACAGGTTGA AGGCTAAAAT TTTCGGCGGG GCACAGATGA CAAAAACTTC GGTACTCAAT GTCGGGCAGT CTAATATTGA GTTTGTGAAA AACTACCTGG CACTGGAAAA TATCCCGATA GAAACAGAGG ACTTAGGCGG TCCCTGGCCG AGAAAAGTCC TTTTTCACCC CAATAGCGGC AAAGTGTTAC TGAAACGCAT GTCTCCGGAG CGAATCTCTC AGATGATGAC TGAAGAGAAG GTCTATCTCA AAGGTATTGT TACAGAGCTG GAAGACAATC AGGTCGAATT ATTTGATTAG
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Protein sequence | MQAVAIPPPR IGFEGIPRNW DKKHSKVIAR VDPGAFYITS HDEYIFTRLG SCVAACIWDP LLGIGGLNHF LLPERELNED WHQLTSYSCR YGNLAMEQLI NGILTSGGQR HRLKAKIFGG AQMTKTSVLN VGQSNIEFVK NYLALENIPI ETEDLGGPWP RKVLFHPNSG KVLLKRMSPE RISQMMTEEK VYLKGIVTEL EDNQVELFD
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