Gene Ssed_0610 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0610 
Symbol 
ID5613124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp737723 
End bp738352 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content47% 
IMG OID640931455 
Producthypothetical protein 
Protein accessionYP_001472350 
Protein GI157373750 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1871] Chemotaxis protein; stimulates methylation of MCP proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000882813 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCTG TCGCGATACC TCCGCCACGA ATTGGCTTTG AGGGGATCCC CAGAAACTGG 
GACAAAAAAC ATAGTAAAGT GATCGCCAGG GTCGACCCCG GCGCCTTTTA TATTACTTCC
CACGATGAAT ATATATTTAC CCGGCTCGGG TCCTGTGTGG CGGCCTGTAT CTGGGATCCA
CTCTTAGGTA TTGGCGGTTT AAACCACTTC CTTCTCCCGG AAAGAGAGCT CAATGAAGAT
TGGCACCAAT TAACCAGTTA CTCCTGTCGC TACGGGAATT TAGCGATGGA GCAGTTAATT
AATGGCATCT TAACCTCGGG TGGTCAACGC CACAGGTTGA AGGCTAAAAT TTTCGGCGGG
GCACAGATGA CAAAAACTTC GGTACTCAAT GTCGGGCAGT CTAATATTGA GTTTGTGAAA
AACTACCTGG CACTGGAAAA TATCCCGATA GAAACAGAGG ACTTAGGCGG TCCCTGGCCG
AGAAAAGTCC TTTTTCACCC CAATAGCGGC AAAGTGTTAC TGAAACGCAT GTCTCCGGAG
CGAATCTCTC AGATGATGAC TGAAGAGAAG GTCTATCTCA AAGGTATTGT TACAGAGCTG
GAAGACAATC AGGTCGAATT ATTTGATTAG
 
Protein sequence
MQAVAIPPPR IGFEGIPRNW DKKHSKVIAR VDPGAFYITS HDEYIFTRLG SCVAACIWDP 
LLGIGGLNHF LLPERELNED WHQLTSYSCR YGNLAMEQLI NGILTSGGQR HRLKAKIFGG
AQMTKTSVLN VGQSNIEFVK NYLALENIPI ETEDLGGPWP RKVLFHPNSG KVLLKRMSPE
RISQMMTEEK VYLKGIVTEL EDNQVELFD