| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0587 |
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| Symbol | |
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| ID | 5610129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 715948 |
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| End bp | 716892 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931432 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472327 |
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| Protein GI | 157373727 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0654708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000117707 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGGCCTT TTTTATCGAT AATCTTTATC TTAAGCCTAG CCGCTTGTCA GGGAGATGTT
ACAAACCAAG CGCTAGGAAC GTTAGAACGT GACCGGGTAT TACTCAGGGC GACGGCAAGT
GAGATCATCA CCGACCTGCC CATAGCCGAA GGAAGCATGG TCAAAAAGGG CGAATTACTG
TTACAGTTTG ATAACAATAA ACAGCTGGCG ACTGTAGCGA TGGCCAATGC TGAAGTCCAA
AAATCACAAG CCTACCTGTT AAGATTAACC AATGGTGAAC GACCCGAAGA TATTGCCAGC
GCTCAGGCAA ATGTAGCCCG AACCCAAGCC GCCCTGATAG AGGCCAAACA ATCCTATAAA
AGAACATCCA GCTTATTGAA GCAAAATCTT GCCAGCCAGG CAGCACAAGA CAGAGCGAGA
GCGAACCGAG ATCAAAGCCA GGCCGAATTT AACGCAGCCA ATGAAAACTT AAGCAAGTTG
ATCGCGGGAG TCAGAGAGGA AGATATCAAC CAGGCTAAGG CGGCGCTCGA TGCTGCAAAG
GCCTACCTGT CGCTGGAAAA GAAGACCTTA GACGATCTCA GCGTGATCGC CACCAGAGAT
GGAAATCTCG ATAGCCTGCC TTTCAATCTC GGAGAGCGCG TCCCACCCAA CGCCGTGATT
GTGGCGATCC AAGCCGATAA TGCCCCCTAT GCCAGGGTCT ATATTCCTGA GACTCATGTT
GCCAAACTGA CAATAGGTCA GACACTTACA GTCCATGTCG ATGGCGTCGA ACAGGTATTT
CAAGGCAAGC TGCGTTGGCT GAGTACCCAG CCAGCTTTTA CTCCTTACTA TGCGCTGAAC
CAGGAGGACA GAGCCCGACT GGTCTTTCTG GCCGAGATAG ATCTGGGCAG CGACGCAGAC
AGACTGCCCA CAGGGATCCC CTCCCAAGTG GACCTGCCAT TATGA
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| Protein sequence | MRPFLSIIFI LSLAACQGDV TNQALGTLER DRVLLRATAS EIITDLPIAE GSMVKKGELL
LQFDNNKQLA TVAMANAEVQ KSQAYLLRLT NGERPEDIAS AQANVARTQA ALIEAKQSYK
RTSSLLKQNL ASQAAQDRAR ANRDQSQAEF NAANENLSKL IAGVREEDIN QAKAALDAAK
AYLSLEKKTL DDLSVIATRD GNLDSLPFNL GERVPPNAVI VAIQADNAPY ARVYIPETHV
AKLTIGQTLT VHVDGVEQVF QGKLRWLSTQ PAFTPYYALN QEDRARLVFL AEIDLGSDAD
RLPTGIPSQV DLPL
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