Gene Ssed_0569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0569 
Symbol 
ID5609815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp693249 
End bp694397 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content54% 
IMG OID640931414 
ProductABC-2 type transporter 
Protein accessionYP_001472309 
Protein GI157373709 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.101548 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTTT GGCAATTTCT ATTGGCAGAC TTGCGCGCGA TTGTAATGGA TAAGGCGATC 
GCCATTACCC TGTTTGGCGG TGTGCTGTTT TATTCTGTGC TCTATCCGCT GCCCTATTTG
AATCAGGTGC CGACCGAGCA GATGTTGGTG GTTATCGACC ATGATGGTTC ATCTTTGAGC
CGCCGCTTGA TCAGACACGC CGATGCCAGC CCTAAAATTA CCGTGACCGG CCAGGTAAGC
ACTATCGAAA CGGCTCAAAG CTGGATCGAA TCCGGCAGGG CCAATGGCTT ACTGGTTATC
CCCCATGGTT TCAGGAAAGA TCTGATGCTG GGGCGAGGGT CAACCTTAAG CTATGGCGGC
GATGCCAACT ATTTTTTAAT CTATTCCGCC GTGGTAGAAG GCCTGGTTTC TGTGGGGCTG
GACGCGAGCA AGTATGTGCA GCTCGTGGGT CTGCTAGCCC ATGGTGAGAA CGCTAAGGCC
GCAGAGCGAA GCCTGAATGC GGTGAAGCTC AATAGTGTGC CCGCCTTCAA TCCGAGTCTG
GGATACACCC CCTATGTGGT ACCCGGGGTA CTGCTACTGG TACTACACCA AACCCTATTA
ATCGGAACCG GCATCTTGGG CGCCGGACAG TGGCGAAACC AAGGCTATTG GCGCAGGGTT
TCCCCCCTGA TGCTGATTAG CGGACGTATC TGTGTGTTCT TCCTCATCTA TACCCTGTTC
ACCAGTCTGT ATGTGGGGCA TTGCTATTAC TGGTACGGGG TCAGCGTACA GGCAACGCTG
GGGCAGGTCG CGCTATTTCT GCTGCCATTT CTGCTATCGA CCGCGGTTAC CGGTATCGCG
TTTAGTTGTC TGTTCACCCG TCGGGATCTG CCGACTCAGG TATTGCTGCT GATCTCTATG
CCGATCCTCT TCGTATCCGG ATTTGTGTGG CCGTTGGAGT TGATCCCGGA GCCTCTTATC
TGGATCTCCA CCATTATCCC GGCGGTACCG GCGATTATCG GAATGTTACA GCTCAATCAG
ATGGGGGCTT CATGGGTCAG TATCATGCCC CTATGGCTTC ACCTGTGGGG TCTGTTTGCA
CTCTTCTTCA TGCTGGCCCT CTATGGGGTT AATTGGCGGT TGAAGCGAGA GCCGAACTGC
GAGTCATAA
 
Protein sequence
MTFWQFLLAD LRAIVMDKAI AITLFGGVLF YSVLYPLPYL NQVPTEQMLV VIDHDGSSLS 
RRLIRHADAS PKITVTGQVS TIETAQSWIE SGRANGLLVI PHGFRKDLML GRGSTLSYGG
DANYFLIYSA VVEGLVSVGL DASKYVQLVG LLAHGENAKA AERSLNAVKL NSVPAFNPSL
GYTPYVVPGV LLLVLHQTLL IGTGILGAGQ WRNQGYWRRV SPLMLISGRI CVFFLIYTLF
TSLYVGHCYY WYGVSVQATL GQVALFLLPF LLSTAVTGIA FSCLFTRRDL PTQVLLLISM
PILFVSGFVW PLELIPEPLI WISTIIPAVP AIIGMLQLNQ MGASWVSIMP LWLHLWGLFA
LFFMLALYGV NWRLKREPNC ES