Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0565 |
Symbol | |
ID | 5612469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 688086 |
End bp | 689558 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931410 |
Product | peptidase U62, modulator of DNA gyrase |
Protein accession | YP_001472305 |
Protein GI | 157373705 |
COG category | [R] General function prediction only |
COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.153604 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAGA AGAGAGAACT ATTAATGCCA TTTTTAACTC AAGTAGAAGC AAGCTTACTG CAAGATGGAC AGTCACTGAA TGATCTACAG GGCTACCTTA ATTCCATTCA TCAGCATAAT GTCGATTTTT CCGATCTCTA TTTTCAGGGA AGCCGCCATG AATCTTGGGT ATTAGAAGAT GGCATAGTAA AAGAGGGTAG TTTCCACATC GAACGTGGCG TCGGCGTGCG TGCCATTACC GGTGAAAAAA CCGGGTTTGC CTATGCCGAT GAGATAACCC CAGCGGCGCT CAAAGCCTCT GCCGAAGCGG CGCGTAGCAT TGCCGTTGCA GGCAAGAGCG AAACGGTACA AGCCTGGAAG CAACAAGAGG TGAAAGCGCT CTACCAGAGT GCAGATCCGA TTGCGGCGAT GGAAGAGGTG AAAAAGATAG CGCTGCTGAA AGAGGCGGAT GCTTATATAC GTAGCCTCGA TAGCCGTATC ATTCAAGTGG TTATCAGCCT CTCAGGTGTC CATGAAGAGA TATTGATTGC GGCGAGTGAT GGCACGCTTG CCGCCGATAT TCGCCCTCTT GTGCGATTCA ACTGTAGTGT GATCTTAGAA GAAAATGATA AGCGTGAGCG TGGCGCCAGT GGTGGTGGTG GACGCCATGG TTATGAAGTC TTGATGGATA ACGATGATAC CGGCTTGCCT GCTTGTTTCT CTTTTGCCCG TGAAGCGGTC CGTCAGGCAT CGGTAAATCT ACATGCAATC GATGCCCCTG CCGGACAGAT GCCGGTTGTT CTCGGTGCTG GATGGCCCGG AGTCTTGCTC CATGAGGCCG TGGGTCACGG ACTGGAGGCT GACTTTAACC GTAAAGGGAG CAGTGCATTC AGTGGGCTCG TCGGTCAGCA GGTTGCCTCA AAATTAGTCA CCGTCGTCGA TGATGGCTCC ATACCAAACC GTCGCGGCTC TCTGAGCATC GATGACGAAG GCGTTGCAAC CCAAAAGACG GTCTTGATTG AAGATGGGAT CTTAAAGGGC TATATGCAAG ATAAGCTCAA TGCACGCTTG ATGGGTGAAT TGCCCACAGG TAACGGACGC CGGGAATCCT ATGCGCACCT GCCTATGCCA AGAATGACCA ACACCTATAT GGAAGCGGGA GAGAGTGATC CTCAAGACAT TATTAAGTCG GTAAAGAAGG GGGTCTATGC GCCTAACTTC GGAGGAGGGC AGGTGGATAT TACCTCGGGC AAGTTTGTCT TCTCTGCATC TGAAGCTTAC CTGATTGAAA ATGGTGAAGT GACTCAGGCG ATTAAGGGAG CAACCCTGAT AGGAAATGGA CCAGAGGCTA TGGGGCAGAT CTCTATGGTG GGTAACGATC TGGCATTAGA TCAAGGTGTC GGTGTCTGTG GTAAAGATGG TCAGAGCGTT CCGGTTGGTG TAGGTCAACC CTCATTGAAG CTCGATAGCC TGACGGTAGG TGGAACCGCT TAA
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Protein sequence | MSKKRELLMP FLTQVEASLL QDGQSLNDLQ GYLNSIHQHN VDFSDLYFQG SRHESWVLED GIVKEGSFHI ERGVGVRAIT GEKTGFAYAD EITPAALKAS AEAARSIAVA GKSETVQAWK QQEVKALYQS ADPIAAMEEV KKIALLKEAD AYIRSLDSRI IQVVISLSGV HEEILIAASD GTLAADIRPL VRFNCSVILE ENDKRERGAS GGGGRHGYEV LMDNDDTGLP ACFSFAREAV RQASVNLHAI DAPAGQMPVV LGAGWPGVLL HEAVGHGLEA DFNRKGSSAF SGLVGQQVAS KLVTVVDDGS IPNRRGSLSI DDEGVATQKT VLIEDGILKG YMQDKLNARL MGELPTGNGR RESYAHLPMP RMTNTYMEAG ESDPQDIIKS VKKGVYAPNF GGGQVDITSG KFVFSASEAY LIENGEVTQA IKGATLIGNG PEAMGQISMV GNDLALDQGV GVCGKDGQSV PVGVGQPSLK LDSLTVGGTA
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