Gene Ssed_0565 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0565 
Symbol 
ID5612469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp688086 
End bp689558 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content51% 
IMG OID640931410 
Productpeptidase U62, modulator of DNA gyrase 
Protein accessionYP_001472305 
Protein GI157373705 
COG category[R] General function prediction only 
COG ID[COG0312] Predicted Zn-dependent proteases and their inactivated homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.153604 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGA AGAGAGAACT ATTAATGCCA TTTTTAACTC AAGTAGAAGC AAGCTTACTG 
CAAGATGGAC AGTCACTGAA TGATCTACAG GGCTACCTTA ATTCCATTCA TCAGCATAAT
GTCGATTTTT CCGATCTCTA TTTTCAGGGA AGCCGCCATG AATCTTGGGT ATTAGAAGAT
GGCATAGTAA AAGAGGGTAG TTTCCACATC GAACGTGGCG TCGGCGTGCG TGCCATTACC
GGTGAAAAAA CCGGGTTTGC CTATGCCGAT GAGATAACCC CAGCGGCGCT CAAAGCCTCT
GCCGAAGCGG CGCGTAGCAT TGCCGTTGCA GGCAAGAGCG AAACGGTACA AGCCTGGAAG
CAACAAGAGG TGAAAGCGCT CTACCAGAGT GCAGATCCGA TTGCGGCGAT GGAAGAGGTG
AAAAAGATAG CGCTGCTGAA AGAGGCGGAT GCTTATATAC GTAGCCTCGA TAGCCGTATC
ATTCAAGTGG TTATCAGCCT CTCAGGTGTC CATGAAGAGA TATTGATTGC GGCGAGTGAT
GGCACGCTTG CCGCCGATAT TCGCCCTCTT GTGCGATTCA ACTGTAGTGT GATCTTAGAA
GAAAATGATA AGCGTGAGCG TGGCGCCAGT GGTGGTGGTG GACGCCATGG TTATGAAGTC
TTGATGGATA ACGATGATAC CGGCTTGCCT GCTTGTTTCT CTTTTGCCCG TGAAGCGGTC
CGTCAGGCAT CGGTAAATCT ACATGCAATC GATGCCCCTG CCGGACAGAT GCCGGTTGTT
CTCGGTGCTG GATGGCCCGG AGTCTTGCTC CATGAGGCCG TGGGTCACGG ACTGGAGGCT
GACTTTAACC GTAAAGGGAG CAGTGCATTC AGTGGGCTCG TCGGTCAGCA GGTTGCCTCA
AAATTAGTCA CCGTCGTCGA TGATGGCTCC ATACCAAACC GTCGCGGCTC TCTGAGCATC
GATGACGAAG GCGTTGCAAC CCAAAAGACG GTCTTGATTG AAGATGGGAT CTTAAAGGGC
TATATGCAAG ATAAGCTCAA TGCACGCTTG ATGGGTGAAT TGCCCACAGG TAACGGACGC
CGGGAATCCT ATGCGCACCT GCCTATGCCA AGAATGACCA ACACCTATAT GGAAGCGGGA
GAGAGTGATC CTCAAGACAT TATTAAGTCG GTAAAGAAGG GGGTCTATGC GCCTAACTTC
GGAGGAGGGC AGGTGGATAT TACCTCGGGC AAGTTTGTCT TCTCTGCATC TGAAGCTTAC
CTGATTGAAA ATGGTGAAGT GACTCAGGCG ATTAAGGGAG CAACCCTGAT AGGAAATGGA
CCAGAGGCTA TGGGGCAGAT CTCTATGGTG GGTAACGATC TGGCATTAGA TCAAGGTGTC
GGTGTCTGTG GTAAAGATGG TCAGAGCGTT CCGGTTGGTG TAGGTCAACC CTCATTGAAG
CTCGATAGCC TGACGGTAGG TGGAACCGCT TAA
 
Protein sequence
MSKKRELLMP FLTQVEASLL QDGQSLNDLQ GYLNSIHQHN VDFSDLYFQG SRHESWVLED 
GIVKEGSFHI ERGVGVRAIT GEKTGFAYAD EITPAALKAS AEAARSIAVA GKSETVQAWK
QQEVKALYQS ADPIAAMEEV KKIALLKEAD AYIRSLDSRI IQVVISLSGV HEEILIAASD
GTLAADIRPL VRFNCSVILE ENDKRERGAS GGGGRHGYEV LMDNDDTGLP ACFSFAREAV
RQASVNLHAI DAPAGQMPVV LGAGWPGVLL HEAVGHGLEA DFNRKGSSAF SGLVGQQVAS
KLVTVVDDGS IPNRRGSLSI DDEGVATQKT VLIEDGILKG YMQDKLNARL MGELPTGNGR
RESYAHLPMP RMTNTYMEAG ESDPQDIIKS VKKGVYAPNF GGGQVDITSG KFVFSASEAY
LIENGEVTQA IKGATLIGNG PEAMGQISMV GNDLALDQGV GVCGKDGQSV PVGVGQPSLK
LDSLTVGGTA