| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0563 |
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| Symbol | |
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| ID | 5610409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 682999 |
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| End bp | 687258 |
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| Gene Length | 4260 bp |
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| Protein Length | 1419 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931408 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472303 |
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| Protein GI | 157373703 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.72639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.280407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTCGTC AATTCTGTCC CTTTAAGTTT AGCCGTTTCT GCTGGCAAAT ATTAGCGATT
ATATTGGTGC TGTTTGCCTT GGCTGTGAGT CTCTTTCGGG GGCTCTTGCC TCAGCTCGCA
GAGGTAAGGC AAGAGCTGGT CAAATATGTC GAAGAGCAGT ATCAGGTTCA GGTTAACGTA
GGAGAGCTCA ACGCCGAGTG GCAGGCCTTT GGCCCCGCCT TAACGGTAAA AAACTTAGTA
CTCCCCCCTC AGGAACGCTT GCCTTTTACC CTGATAATTC GTGATGTCCA TGTCAAGCTC
GATTTCTGGG AGAGCTTGAT GACGACCAGC CCCCAGATTG AAAATGTTAT TTTCGAAGGG
GTCCAGGTTG GGCTCGATCT CGATAAACTC AATCAGGCTG GCCCCTCAAC AGTATCTGCA
GAAACCGATA CCGACTGGCT ATATCGTCTA CTACTAGAGC AGTTAGAACA CTTCTCGATA
ACGGAGGCCA GCTTACAGTT ACTCAGCAAG AGTCATGATT TCAGACCTAT CTATGTCAAA
GACTTGAGAT GGCAAAACAG GAACAACAAA CATCAGGGCC AGGGAAAACT CTACCTCGAT
GAAAAAGCCT CTGAGGTCGA GCAGCTCTCT CTGTCGCTGG AGATTGATGG TAATGGTTTC
AGGCCCGATA CCCTTAAAGG GCAAGTTTAT CTCGCGGCCA GCTCTTTGGA TCTGGGCGAG
TGGGCCTCCA GACAGGCGAA TCCATATGAT GAGAAAAGCA AACTGCCTCT TGAAGGTGTA
GTGAATCTGC AGGCCTGGTT GAGCCTGGGG AATCGGTCGA TCGAATCCGG ACTCATCCAG
TTTGAGCCTA GCTGGCTCGA GTGGCAGTTA AATGAAGAAG TGCAACATTT TGAAATCAAA
GGTGGGCAGT TCGAGTGGCT ACCGATTGAT AAGGGTTGGC AGTTAAGTAG CAGATCGCTT
GAATTTGAAA CCAATGATCG ACCATGGTCT GAGCTCAACT TTGTTGCACA GCAACGAGGC
GAGCAGCTAT CGGCCTATCT GAATCGATTA GACACCAGTA CCCTGTTACC CCTGCTACCC
TTAGCGCCAA AGGTCGATCT GCTTGCTCTG AAAACCTGGC AGTCGATAAA CCCCCAAGGT
TATCTGGATA ATATCAAATT CTCTCTTAAT GGAGATCTGG GCCCGCAAGT TTCGCTGGAT
ATTAATCAGT TGCAATGGCG AAACTTTGAG AGTATCCCGG GCAGTAAAGC ATTAGACTTG
CAGGTCGCCT GGTATGATGA TTCACTCTAT TTCAATGCCC CGGAGCAAGC CTACACCTTA
GATTTTAGTA CGGCTTTCAA GGCGCCTATC GTGCTAAATG GCGCCGCTTT CGATGCCCGG
TTTAATACCC AATATAGTGA ATTAACGCTT CCTCGCCTTC AATTTAGCAA TAAAGATATC
GGCATAGACG CTTCCGTGAA AATGGGGTTT GCAGGTGACA CTCATCTTGC GCTACTTGCA
GATGTGAAGA TCAATGATGT CGTCGATGTG GGTAATTACT TTCCGCTACA TGGTATGGAT
GCCGGGTTAG TCGACTATCT TGAGGCCGGG CTCGTTGCGG GTAATACCCA AGATGCTAGA
GTGGTATGGC ATGGTCCATT AAATCAATAC CCATACAAGG ATCATTCCGG GATCTTTCAG
GCGGCTTTCA CCCTGAGTGA TGCTGAGTTC AAGTTTCAGC CCGATTGGCC CGCGGTAACC
TCTCTTGAGC TATCCGCTCT GTTTGAGAAC GCTCGAATGG ATCTCACTAT CGATAGCGGT
GATCTCTTAG ATGTCGTCGT CGATGGGGCT CGTATCAGTA TTCCTGAATT GGGCGCGCGC
TCCCTGCTGG AGATTGATGC CGAGCTGGCA ACCCAAGGTG TTGCAGCGAC AGAGGTGATT
CAAGCCTCAC CACTGGCCGA GTCTGTCGGT TCCACGTTGG CGGTGGTTCA GGTGCAGGGT
GACGTTACCG CCACTTTGGA TCTTTCAATT CCTCTTTATG ATGGTGAAGA GGAGCAGATC
CGTGGCTTAG TGAATCTCGA TAACACACCT ATATATATCA CCGAACCTGG GGTGCAGCTC
GATGGCGTGA CGGGGCAGGT GAGCTTCGTT AACGAGGTGG TGAAGGGTAA AGATATCTCC
GCTCTGTTAT ATCAACAACC AGTTTCATTG ACTTTCGATA CCGAGCAGGT ACGAGACAAT
TATGGATTGA ATCTGGATCT TAAGGGAGTT TGGCAGCTCG ACGAGCTTCC GGCCGAGCTC
GATAATCCCT TGATGGATTT CTATTCCGGT GAGGTAAACT GGAATGGTGC CATGACACTT
ATTTTCGATC AGACGGGCTA CCGCATTCAG GCTCAGGTCA ATAGCGATCT GCTTGGTACC
GAGTTAACGC TTCCTCCACC ATTTTCTAAA GCCACAGATG AGAAGCGAAG GCTATCTGCC
GAGCTCATCG GTGACAATAA ACAGTCCTCG CTGGGGATCA AGCTGGGCAA TCAGATGGAG
TTCTGGGGGG GATTCGATCT CGAGTCGGGT GATCAATTAA GCCACTTCGA TCTTCTGCTG
GGACGCCTGT TTAAACCGGG CGATCAACTG AAACGAGACC AGGGGCATCT GCAGTTAGAT
ATTGCTCAAA CAGAGTTTTC CCCTTGGTTA CCCATTATTA CTAGTTTCAC CTCGGCAGCC
ACTTCTGAGA TTAACCTTGC CCCGATTGTG CCCGAGCCTC AATCAGTGCC TGAAACTGAG
GCAGTGTCTG CTCCTGAGTT AAATCCAGGC GAGAAGGCAT CGGTGCAACA AGAACAAACC
AGGGGCTTCT TTCCTCCCCT TATCAGCATC GATGCTGATA TTGGCGATCT GAATCTGATG
GGACAAACCC TCTCTGAATT GACCATGACG GCGGCCCCTT TTGAGGAGTT ATGGCGCTTC
GAGGCTCAGT CTAAAGAGTT TGATGGAAGG ATAGATTTTT ACCCGGATTG GTCGACTCAG
GGTCTGAAGA TGGTCGCCAA AAAGTTTCAT ATTGCACCAG CGGTAAAGGA GGAAGCTAAG
GCTGATTTTA AGTCCGGTAC AGTGCTGAAT AATTTGCCGC CACTGGCATT AGATGTCGAT
GACTTTCGTC TATATGGAAA GCCTTTGGGC CACCTGGTAC TACAGGGGAC GCCCAAAGAG
GGGCACTATC AGATACAAAC TCTCTCTTTG ACCACGCCCG AGGTGAAACT GAGCGGCAAG
GGGGCATGGA AGAACAGCGA GGGCGAAAAT GTCACCGAGT TTGACGTGAA GTTAGATGCG
ACAAAATTTG ATGCATTATC CTCTATCCTC GATATGGATC CCGGCTTAAA AGATGCGCCG
GTTGAAATAG ATGCCAATAT CTCCTGGCAG GGAGCCCCCT ACGCGTTCTC TCTCGAGTCG
CTCAATGGCA AGATAAACTT CGAGCTGGGG AAAGGGCACC TGTCTGAAGT CAGTGATAAA
GGAGCCAGAA TTTTCTCGCT ATTCAGCTTA GATTCCCTGC TAAGAAAACT TTCACTCGAT
TTCTCCGATG TATTCGGCAA AGGCCTCTAT TTTAATTCGT TTACCGGTAC TCTGGAGATA
GATAACGGTG TCATTAAAAC CCGTGATACC GAGATGGATG CCGTTGCGGG AAATATGAAG
GTCAGAGGTT ACACTGACTT AGTTACCGAA AGCCTGAATT ACGATATTCG CTTCGTACCT
CAACTCGCCT CCAGTGTTCC TACGGTTGTA CTGCTCACCA CAGGCGGTTG GACGCTGGGG
ATCGGGGCTT TTGCCCTGAC GAAAGTGCTC GAACCTGTCA TCGAGGTGAT CACCGAGCTA
AGGTTCAGGC TGACGGGAAC CATGTCAGAG CCTAAACTCG AAGAGTTAGA GCGCAAGAGT
AAAGAGATCG AGATCCCCGA GTCTGCACTG CCTCGCACTA AAGAGGGTCA GCCTGATAAT
AAACAGCCTG CTAAAAAGGG GGCCGAGACT CAAGGGGTTG AGAAGCAAGA AGAGAAGAGT
CAAGGAGCCG ATTCTCGGGA GTCCTCTGCT CCTGCTAAAA TTAACGAATC CGGAGTCGAA
ATTCTTGCAC CAAAAGTGAT TGAGATGCCA GACTTTAGGG AGACCAACTC TTATCCCCCA
GCCAGCAATG AAGATAAGAT CAGCCCACCG AAGGAAGCAA TAGATGCAGA TCAGCCTGTT
ACAGTGCCAA AGCAGTCGAG ATATAGCCCA AAACCTGCAG TTTATCGAGT CGCAGCTTAG
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| Protein sequence | MPRQFCPFKF SRFCWQILAI ILVLFALAVS LFRGLLPQLA EVRQELVKYV EEQYQVQVNV
GELNAEWQAF GPALTVKNLV LPPQERLPFT LIIRDVHVKL DFWESLMTTS PQIENVIFEG
VQVGLDLDKL NQAGPSTVSA ETDTDWLYRL LLEQLEHFSI TEASLQLLSK SHDFRPIYVK
DLRWQNRNNK HQGQGKLYLD EKASEVEQLS LSLEIDGNGF RPDTLKGQVY LAASSLDLGE
WASRQANPYD EKSKLPLEGV VNLQAWLSLG NRSIESGLIQ FEPSWLEWQL NEEVQHFEIK
GGQFEWLPID KGWQLSSRSL EFETNDRPWS ELNFVAQQRG EQLSAYLNRL DTSTLLPLLP
LAPKVDLLAL KTWQSINPQG YLDNIKFSLN GDLGPQVSLD INQLQWRNFE SIPGSKALDL
QVAWYDDSLY FNAPEQAYTL DFSTAFKAPI VLNGAAFDAR FNTQYSELTL PRLQFSNKDI
GIDASVKMGF AGDTHLALLA DVKINDVVDV GNYFPLHGMD AGLVDYLEAG LVAGNTQDAR
VVWHGPLNQY PYKDHSGIFQ AAFTLSDAEF KFQPDWPAVT SLELSALFEN ARMDLTIDSG
DLLDVVVDGA RISIPELGAR SLLEIDAELA TQGVAATEVI QASPLAESVG STLAVVQVQG
DVTATLDLSI PLYDGEEEQI RGLVNLDNTP IYITEPGVQL DGVTGQVSFV NEVVKGKDIS
ALLYQQPVSL TFDTEQVRDN YGLNLDLKGV WQLDELPAEL DNPLMDFYSG EVNWNGAMTL
IFDQTGYRIQ AQVNSDLLGT ELTLPPPFSK ATDEKRRLSA ELIGDNKQSS LGIKLGNQME
FWGGFDLESG DQLSHFDLLL GRLFKPGDQL KRDQGHLQLD IAQTEFSPWL PIITSFTSAA
TSEINLAPIV PEPQSVPETE AVSAPELNPG EKASVQQEQT RGFFPPLISI DADIGDLNLM
GQTLSELTMT AAPFEELWRF EAQSKEFDGR IDFYPDWSTQ GLKMVAKKFH IAPAVKEEAK
ADFKSGTVLN NLPPLALDVD DFRLYGKPLG HLVLQGTPKE GHYQIQTLSL TTPEVKLSGK
GAWKNSEGEN VTEFDVKLDA TKFDALSSIL DMDPGLKDAP VEIDANISWQ GAPYAFSLES
LNGKINFELG KGHLSEVSDK GARIFSLFSL DSLLRKLSLD FSDVFGKGLY FNSFTGTLEI
DNGVIKTRDT EMDAVAGNMK VRGYTDLVTE SLNYDIRFVP QLASSVPTVV LLTTGGWTLG
IGAFALTKVL EPVIEVITEL RFRLTGTMSE PKLEELERKS KEIEIPESAL PRTKEGQPDN
KQPAKKGAET QGVEKQEEKS QGADSRESSA PAKINESGVE ILAPKVIEMP DFRETNSYPP
ASNEDKISPP KEAIDADQPV TVPKQSRYSP KPAVYRVAA
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