| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0562 |
|---|
| Symbol | |
|---|
| ID | 5610408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 681497 |
|---|
| End bp | 682999 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640931407 |
|---|
| Product | ribonuclease G |
|---|
| Protein accession | YP_001472302 |
|---|
| Protein GI | 157373702 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.229601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.227015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCA TCGTCAGAAA CAGAGTACAG AAAAAAATTG GTTCTGAACT ATTGATCAAT
GTGACGCCGA CTGAAGCTCG TGTCGCTTTG GTTGAACATG GCGTTCTGCA GGAAATCCAC
ATTGAAAGGC GGATGAAACG TGGCTTAGTC GGCAATATCT ATAAGGGAAA GGTTAGCCGG
GTACTGCCGG GTATGCAGGC GGCGTTTGTC GATATTGGCC TGGATAAGGC GGCATTTTTG
CATGCCTCAG ACATAGTTCC TCATACTGAA TGTGTTGCCG ATGTAGAGAA AGGCAACTTC
ATCGTTCGTG ATATCAATGA GTTAGTGCGT CAAGGGCAGG ATATCATGGT TCAGGTGGTG
AAAGACCCTC TGGGAACCAA AGGCGCCCGA CTGACAACCG ATATAACGCT TCCATCTCGC
TACCTGGTCT TTATGCCCGG TTCAAGCCAT GTTGGTGTGT CTCAGAGAAT CGAATCTGAA
GAGGTGCGCT CTCGTCTTAA GGGATTGACA GAACCCTTTG TCGATGAAGA TGGTGGATTT
ATTATTCGTA CCGCCGCGGA GAGCGCCGGC GAGCAGGAGT TGGTCCAGGA TGCCGCTTTT
TTACGTCGTG TTTGGGGAAG GGTGAGTGAG CGTCGTAAAC TCAAAGGTGT GTCGCTGCTT
TACCAAGACC TGGCACTACC TGTTCGTATC GTGCGTGATT TTGTCGGTAC AGAATTAGAT
CAGATCCAAG TTGATTCGAG TCAGACATTC GAAGAGTTAC AGGCATTTTC TGAAGAATTT
ATGCCTGAGA TTGCCGAGAA GATAGAACAT TACAACGGCC CGGTTCCCAT CTTTGACCTG
TATGATGTTG AAAATGAAGT CCAGCGCGCC CTTGGCAGAA AAGTCGAGCT GAAATCCGGT
GGTTATTTGA TTATCGATCA AACCGAAGCT ATGACCACTG TAGATATCAA TACCGGTGCT
TTCGTGGGTC ACAGAAATCT CGAAGAGACT ATCTTCAATA CCAACCTCGA AGCGACACAG
GCTATCGCGC GTCAACTCAG GTTGCGTAAT CTGGGTGGCA TTATCATTAT CGACTTCATC
GATATGTTGA GATCTGAGCA CCAGAAGCGT GTCCTTGCCA GTTTGGAACT TGCCTTGTCC
GCCGACAGGG TTAAGACCAA TATTAGTGGT TTCTCAGGTC TTGGCTTAGT GGAGATGACG
CGTAAACGAA CTCGAGAGAG TATAGAGCAC GTGCTATGTG GAGAGTGCCC TGCCTGTTAT
GGCACCGGCA GTTTGAAAAC CGTTGAAACA GTCTCTTATG AAATATTCAG AGAGATCATT
CGATTAGATC GTAGCTACGA TGCCGACGAA TTCTTAGTCT ATTGTGCTCC CGGCGTCTTT
AACAGCCTGA CGGGGGAAGA GGGACATTTG GTTGCTGAGT TGGGTGTGTA TATAGGAAAA
CGTGTTCGTT TTCAAAATGA ACCTATGTAT GCACAAAATA AATTTGATGT GGTAATAATG
TAG
|
|---|
| Protein sequence | MSRIVRNRVQ KKIGSELLIN VTPTEARVAL VEHGVLQEIH IERRMKRGLV GNIYKGKVSR
VLPGMQAAFV DIGLDKAAFL HASDIVPHTE CVADVEKGNF IVRDINELVR QGQDIMVQVV
KDPLGTKGAR LTTDITLPSR YLVFMPGSSH VGVSQRIESE EVRSRLKGLT EPFVDEDGGF
IIRTAAESAG EQELVQDAAF LRRVWGRVSE RRKLKGVSLL YQDLALPVRI VRDFVGTELD
QIQVDSSQTF EELQAFSEEF MPEIAEKIEH YNGPVPIFDL YDVENEVQRA LGRKVELKSG
GYLIIDQTEA MTTVDINTGA FVGHRNLEET IFNTNLEATQ AIARQLRLRN LGGIIIIDFI
DMLRSEHQKR VLASLELALS ADRVKTNISG FSGLGLVEMT RKRTRESIEH VLCGECPACY
GTGSLKTVET VSYEIFREII RLDRSYDADE FLVYCAPGVF NSLTGEEGHL VAELGVYIGK
RVRFQNEPMY AQNKFDVVIM
|
|---|
| |