| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0548 |
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| Symbol | |
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| ID | 5611180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 669099 |
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| End bp | 670319 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640931393 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001472288 |
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| Protein GI | 157373688 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00110848 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCT ATAAATATCG TGGGCGGGAT GCACAGGGAC AGCAGGTGAC CGGATTGGTC
GATGCGGCCT CAGAAAGTGC GGCCGCCGAT CAGTTGATGT CTCGCGCTGT GATCCCATTA
GAACTCGATG AGGCCAAGGA GAAGCGAGAG TTTTCTCTGG CTTCTCTGTT TAAGGGCAAA
GTGTCACTCG ATGAGCTGCA GATCTTCTCC AGGCAGATGT ATTCCCTGAC TCGTTCGGGG
ATCCCAATCC TCAGAGCGAT CGCAGGTCTT TCAGAAACGA CACATTCACA ACGAATGCGG
GATGCGCTTA ACGATATCTC TGAACAGCTC ACCTCGGGAC GTCCACTTTC ATCGGCGATG
AATCATCACC CCGATGTGTT CGATGCGCTT TTTGTCTCTA TGGTCCATGT CGGAGAGAAT
ACCGGTAAGC TGGAAGATGC CTTTATTCAA CTCGCGGGTT ATATCGAGCG TGAGCAGGAG
ACCCGCCGAC GGATCAAGGC GGCGATGCGA TATCCCATCT TCGTACTCAT TGCCATAGCT
CTGGCCATGG TGATCCTCAA TATCATGGTG ATCCCCAAAT TTGCCGAAAT GTTCTCCCGT
TTCGGCGCCG ATCTTCCCTG GGCGACCAAG GTACTTATCG GAACCTCTAA CCTGTTTGTT
AACTATTGGC CCGCCATGCT TGTTGGTCTC GTCGCTACCT TTATCGGTAT CCGATACTGG
CACAGCACAG AGAAGGGGGA GAAACAGTGG GACAGTTGGA AACTGCATAT TCCGGCTGTC
GGTAGCATCA TCGAGCGCTC GACCCTGTCA CGCTATTGCA GAAGCTTCTC CATGATGCTG
AGCGCTGGCG TGCCCATGAC CCAGGCACTC AGTTTGGTCG CCGATGCGGT CGATAATGCC
TATATGCATG ACCGAATAGT GGGCATGCGT CGTGGTATCG AGTCCGGCGA CTCTATGTTG
AGGGTCTCTA ATCAGAGTCA ATTGTTCACG CCACTGGTAC TACAGATGGT TGCCGTAGGC
GAAGAGACGG GGCAGATAGA TCAGCTGCTC AACGATGCCG CCGACTTCTA TGAAGGGGAG
GTCGATTACG ACCTGAAAAA CCTCACCGCC AAGCTGGAAC CTATCTTAAT CGGATTTGTG
GCAGGGATCG TGCTTATATT AGCATTGGGT ATTTATTTGC CTATGTGGGA CATGCTCAAC
GTTGTCAAAG GCGGCAGCTA G
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| Protein sequence | MATYKYRGRD AQGQQVTGLV DAASESAAAD QLMSRAVIPL ELDEAKEKRE FSLASLFKGK
VSLDELQIFS RQMYSLTRSG IPILRAIAGL SETTHSQRMR DALNDISEQL TSGRPLSSAM
NHHPDVFDAL FVSMVHVGEN TGKLEDAFIQ LAGYIEREQE TRRRIKAAMR YPIFVLIAIA
LAMVILNIMV IPKFAEMFSR FGADLPWATK VLIGTSNLFV NYWPAMLVGL VATFIGIRYW
HSTEKGEKQW DSWKLHIPAV GSIIERSTLS RYCRSFSMML SAGVPMTQAL SLVADAVDNA
YMHDRIVGMR RGIESGDSML RVSNQSQLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE
VDYDLKNLTA KLEPILIGFV AGIVLILALG IYLPMWDMLN VVKGGS
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