| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0547 |
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| Symbol | |
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| ID | 5611179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 667256 |
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| End bp | 669010 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931392 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001472287 |
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| Protein GI | 157373687 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACCAA AGTTAAAGAT GCGTCTGGGT GATCTCCTCG TTCAAGAGCA GATCATCAGC
GAGCCTCAGT TAATGGAGGC TTTGACCGAG CAGCGAAGTA CCGGCAAGAA GCTGGGACGC
ACCCTGATCG ATCTCAACAG TATCTCCGAA GAGCAGCTAC TCAGGTTTCT GTCTCAACAG
CTGCACATCC CTTTTATCGA TATCAGTAAG CGACCTATTC CTCCGGAGGT TGTTAACCTG
TTACCCGAGG TTCAGGCGCG TCGTTTCCGT GCGCTTGTCG TAGAAGATAA CGGCGATAGT
GCCTTGGTGG CCATGAGCGA TCCCGCTGAT CTTCAGGCGA TGGATAATCT CGAAGTACTG
CTCACCCCTA AAAGATTAGA GATCGCGGTT GTTACCGAGG GGCAGCTGCT CGATGCCTTC
GATAATATCT ATCGCCGAAC TGATGAAATT GCTCAAATTG CCGGAAAGCT CGAAGAGGAA
TATGCCGCCG ACGATCAATT CGATCTCGCG AGCTTAACCG ACAGCGACAG CGATAACGAG
ACCACAGTTG TTAGATTGCT GCAGTCGATA TTCGAAGATG CGGTGCAGAT GCGAGCGTCC
GATATTCATA TCGAACCCGG TGACAAGGTG CTGCGCATCA GACAGCGTAT CGATGGCCAA
CTGCATGAAA ATATCCTGCC GGAGGCGAGT ATCGCCGCGG CCTTAGTGTT AAGGCTAAAG
TTGATGGCAG GTCTGGATAT CTCTGAGAAG CGTTTGCCGC AGGATGGCCG GTTTCATATG
GAGATTAAAG GCCATCAGAT AGATGTTCGT ATGTCGACTA TGCCTATTTA CCACGGTGAG
TCGGTGGTGA TGCGTCTGCT GGATCAATCC GCGGGCCTGT TGACCCTGAA CGAAACTGGT
ATGCCACCCG AGATCCTGGA AAGGGTGCGC AAGCAGATTA AACGTCCCCA TGGCATGTTG
CTGGTAACCG GGCCAACGGG TAGCGGTAAA ACCACCACCT TGTATGGTGT GTTGAGTGAG
CTCAACACCG CAGATCGTAA AATTATCACG GTCGAAGACC CGGTGGAATA TCAACTTCCC
AGAATTAACC AGGTACAAGT TAACCATAAG ATTGGCTTAG ACTTCTCTAA CGTACTGAGA
ACGACCTTGC GTCAGGATCC GGATATCATC ATGGTCGGTG AGATGCGTGA CCAAGAGACC
GTAGAGATCG GACTCAGAGG CGCCTTGACG GGCCACTTCG TACTGTCGAC CCTGCACACC
AATGATGCGG TGACCAGTGC GTTACGTCTG CTGGATATGG GGGCGGCGAG TTATCTGGTT
GCCAGTGCGT TGAGGGTGAT TATTGCCCAG CGTCTGGTGA GGCGAGTATG TCAAAACTGT
GCCAGAGAGT ATGAACTGAC GGCTCAGGAT AAGGCCTGGC TCAACAGTAC CAGTCAGCAA
GATTTTTCTC AGGCTAAATT CAGAATTGGA TCGGGCTGTC AAAGTTGTAA CGGCAGTGGT
TACCGGGGAC GAATAGGCAT ATTTGAGATA CTCGAGCTCG ATGAGGCGAT GATCGATGCC
ATGCGTACAG GCAATCCCCA GGATTTTGCC CGAGCAGCAT ACTTAAGCCC TAACTTTATT
CCGTTGGCCG TGTCAGCTTT TAAGTATTTA GCCGAGGGTA TGACTACCAT AGAAGAGGTG
GCTAAACTGG TAGAGGATGT CAATGAGACC GAGTCTCCTC TGTCTATAAG GCAGCAACAA
GGAACTGAGT TTTAA
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| Protein sequence | MKPKLKMRLG DLLVQEQIIS EPQLMEALTE QRSTGKKLGR TLIDLNSISE EQLLRFLSQQ
LHIPFIDISK RPIPPEVVNL LPEVQARRFR ALVVEDNGDS ALVAMSDPAD LQAMDNLEVL
LTPKRLEIAV VTEGQLLDAF DNIYRRTDEI AQIAGKLEEE YAADDQFDLA SLTDSDSDNE
TTVVRLLQSI FEDAVQMRAS DIHIEPGDKV LRIRQRIDGQ LHENILPEAS IAAALVLRLK
LMAGLDISEK RLPQDGRFHM EIKGHQIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPPEILERVR KQIKRPHGML LVTGPTGSGK TTTLYGVLSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCQNC AREYELTAQD KAWLNSTSQQ
DFSQAKFRIG SGCQSCNGSG YRGRIGIFEI LELDEAMIDA MRTGNPQDFA RAAYLSPNFI
PLAVSAFKYL AEGMTTIEEV AKLVEDVNET ESPLSIRQQQ GTEF
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