| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0545 |
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| Symbol | |
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| ID | 5610595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 665113 |
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| End bp | 666021 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931390 |
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| Product | MSHA biogenesis protein MshM |
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| Protein accession | YP_001472285 |
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| Protein GI | 157373685 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATCTGC AACACTTCGG GCTGGCGGAA ACCCCGTTTT CGCTGACGCC CAATACCGAA
TTTTTCTTCG GATTAGCGCC TCATGTTGAG GCGTTACAGG TTCTTCAAAC TGCACTGCAA
ACCGGTGAAG GCTTCATTAA AGTTACCGGT GAGGTGGGGA CGGGTAAAAC CCTCATCTGT
CGAAAATTAA TCAATGAACT TCCCAAACGA TTTCATTGTG CCTATCTGCC CAACCCCTAT
CTCTCTCCTG CAGAACTCAG ATGGGCAGTA GCCCTCGAAT TGGGGCTTAA ATATTCTGCC
GATATCGACC AGATGCAACT TACCGGGCTG ATACAGCAAC AGTTATTGGC TCTGTGTGCC
CATGGTCACT CCATCGTATT AGTGCTCGAT GAAGCGCAAG CCCTGCCCGA TGAGAGTCTC
GAGGCATTGC GCCTCTTTAC CAACTTAGAG ACCGAGAGCC GCAAGCTATT GCAGGTGGTG
CTGTTTGCCC AGCCTGAGTT AGATCAGAGG CTGAGCTTGC ACAACTTCCG ACAACTAAGA
CAAAGAATTA CGTTTAGTTA CTGCCTGAGA GCCTTGACCT TAGATGAAGC CGAAGCCTAT
GTGCAGCACC GCCTGTCGGT TGCCGGAAGA GTGGGTAAGC CCTTGTTTTC CCATAGGGAC
ACACGCCTGC TGGCTAAGGC ATCTAAAGGG ATCCCAAGAT TGATTAATAT TTTGGCTCAT
AAAGCACTAT TGCTCAGCTT CGGAGAGGGG TCACACCAGA TCGAATATCG ACACGTGAAG
GCTGCAATTG TAGATACAGA GGATACGAAA CTGGGTTTTC AAACTAACTG GTTATGGTTC
ATGGGATTTG GCATGATGTC AATGTTAGCG GGTGCTGGCC TTCATCTGTT TTATGGAGGC
GTATCATGA
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| Protein sequence | MYLQHFGLAE TPFSLTPNTE FFFGLAPHVE ALQVLQTALQ TGEGFIKVTG EVGTGKTLIC
RKLINELPKR FHCAYLPNPY LSPAELRWAV ALELGLKYSA DIDQMQLTGL IQQQLLALCA
HGHSIVLVLD EAQALPDESL EALRLFTNLE TESRKLLQVV LFAQPELDQR LSLHNFRQLR
QRITFSYCLR ALTLDEAEAY VQHRLSVAGR VGKPLFSHRD TRLLAKASKG IPRLINILAH
KALLLSFGEG SHQIEYRHVK AAIVDTEDTK LGFQTNWLWF MGFGMMSMLA GAGLHLFYGG
VS
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