Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0534 |
Symbol | |
ID | 5613786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 652346 |
End bp | 654574 |
Gene Length | 2229 bp |
Protein Length | 742 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931379 |
Product | primosomal protein N' |
Protein accession | YP_001472274 |
Protein GI | 157373674 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.680664 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGGTAT CCATTGATCA ATCTTGTCAC CCTATGCCCT TGTTTGTCGA GGTTGCCTTG CCTGTGCCTA TGCGGCAAGC CTTCAGTTAT AAAGTACCAG ATTCCATTTC AACCCTTCCT AAAAAAGGGA TGAGAGTTAA AGTACCCTTT GGTCGTCAGC AATTAATCGG TTTGGTCACG GGCATTTCCG ATACCTGTAA CTTAGCACCT CAGCAGATAA AATCTATCTT TGAGCTGTTA GATGATGAAC CACTACTACC TGATTCACTT TATAAACTAA CCGCTTGGGC TGCAAGATAT TACTTTTGTA GCTTAGGTCA AATGCTCTCG CAAGCCATCC CGGTCGCTTT GCGTAAGGGA GCAGAGATCT CATCAAACAC CACCACTTTC TGGCATCTGA CCCAGTCTGG CAGATCTGCA TCACTCGATA CCTTGAAGCG CGCTCCCGCA CAGAAAAAAG TCATGGAGCA CCTGCTCAAG GGCGAGCTAA CTCAAGATGA AATATCCAGC TTAGCCCTGA GTAAGTCGGC GTTAAAAGCC CTTAATGAGA GAGCGTGGAT AACCCAGGAT GAACGGGTCA ACTCTATCGA TCTTTCCTGG CGAGAGAAAC TCGAGCTCGA TGAAGACCCC TTAACGCTAA ATCCGGAACA AGCCATTGCA GTGGCCACGC TCAACCAACA AACCGGTTAT CACTGCACTT TACTCGAAGG TATTACAGGT TCGGGTAAGA CAGAGGTCTA CCTGGCCCTG CTGGAGTCGG TTCTCAGCAA GGGGAAACAG GCACTGATCT TAGTACCCGA GATAGGCTTA ACGCCACAAA CGATCAGCCG CTTCAAGAGC CGATTCAAGG TGCAGGTCGC CGTTATTCAT TCAGGACTAA CCGATAATCA AAGATTAGCG GCATGGCAAC AGGCAAAAAC CGGCGAGGCG GCGATCATTA TCGGCACACG CTCGGCCCTG TTTACGCCTA TGGCTTTTCC GGGAGTGATA ATCCTGGATG AAGAGCATGA CTCCAGCTTC AAGCAACAGG AGGGCGTCGG TTACCATGCC CGGGATCTCG CAGTGATGCG GGGTCATTTA GAAAAAATCC CTGTGCTACT CGGTACGGCG ACCCCCTCCC TCGAAAGCCT GCAAAATGCA CTCAGCGGCC GTTACAAACA CTTAGAGCTG GGGCAAAGAG CAGGTAATGC TGAGAAAGTG CGCCAGGGCA TCATAGATAT CAGCAATCAG CCCCTGAATA CCGGGCTTTC CCATGCGCTG CTGAACGAGA TGCGTATTCA TCTCGACGCG GGTAACCAGG TACTCCTGTT TCTGAACCGA AGAGGCTTCG CTCCGGCACT ACTCTGTCAC GAGTGTGGTC ACCTCCATGA GTGTGACCGA TGTGATGCTT TTTTCACTGT ACATCAGTCA CTGGGCGAGA TCCGTTGCCA TCACTGCGGT AATCATTACG CCATTCCAAA ACAGTGCCAT AACTGTGGCA GTACCATGTT GATGGGACAA GGCGTTGGCA CAGAGCAACT GGCTAATATT CTGGAGAAAG AGTTCCCGAA ATATCCTGTG GTTCGAATCG ATCGCGATAC CACAAGTAGA AAGGGCGCCC TCGAAGCACA TCTCAACGCT ATCCATAAAG GCGAGTATAA GATCCTGGTC GGCACGCAAA TGCTGGCAAA AGGGCATCAC TTCCCCGATG TGACTCTGGT CGGTTTATTA GATGTCGATG GCGCCCTGTT CAGTGCCGAC TTCAGGGCAC CCGAACGATT CGGCCAACTT TATACCCAGG TATCGGGCCG TGCGGGAAGA GCCAGAAAAC CGGGTACCGT GCTGATGCAA ACTCATCAAG CCGATAACCC TGTATTACGG GAACTAATGC ATAAAGGCTA TGGCGAATTT GCCCGTGGTC AACTCAATGA ACGTAAGCAA GCCTTGCTGC CACCGGCCTG GCATATGCTG CTTATCCGCG CCGAGGCACA TCAGGCCTTA GATGCCGATA ACTTTTTATC CCAAGTCGCC GAACTCTTAC CGCAGAACGA GGAGAGTGAA GTCATTGGTC CTATGCCCGC TCCTATGGAT AAAAAAGCGG GTAAATACCG CCGACATCTT ATTTTTCAGA CCAAGTCGCG CAATCAATTA CAGCATGCAT TCGAACATGC CTTGCCACAG ATAGAGTCTC TGCCTTTGGC GAAACGCTGT CGATGGAGCT TAGATAGAGA CCCACAAGAT CTGCTCTAA
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Protein sequence | MLVSIDQSCH PMPLFVEVAL PVPMRQAFSY KVPDSISTLP KKGMRVKVPF GRQQLIGLVT GISDTCNLAP QQIKSIFELL DDEPLLPDSL YKLTAWAARY YFCSLGQMLS QAIPVALRKG AEISSNTTTF WHLTQSGRSA SLDTLKRAPA QKKVMEHLLK GELTQDEISS LALSKSALKA LNERAWITQD ERVNSIDLSW REKLELDEDP LTLNPEQAIA VATLNQQTGY HCTLLEGITG SGKTEVYLAL LESVLSKGKQ ALILVPEIGL TPQTISRFKS RFKVQVAVIH SGLTDNQRLA AWQQAKTGEA AIIIGTRSAL FTPMAFPGVI ILDEEHDSSF KQQEGVGYHA RDLAVMRGHL EKIPVLLGTA TPSLESLQNA LSGRYKHLEL GQRAGNAEKV RQGIIDISNQ PLNTGLSHAL LNEMRIHLDA GNQVLLFLNR RGFAPALLCH ECGHLHECDR CDAFFTVHQS LGEIRCHHCG NHYAIPKQCH NCGSTMLMGQ GVGTEQLANI LEKEFPKYPV VRIDRDTTSR KGALEAHLNA IHKGEYKILV GTQMLAKGHH FPDVTLVGLL DVDGALFSAD FRAPERFGQL YTQVSGRAGR ARKPGTVLMQ THQADNPVLR ELMHKGYGEF ARGQLNERKQ ALLPPAWHML LIRAEAHQAL DADNFLSQVA ELLPQNEESE VIGPMPAPMD KKAGKYRRHL IFQTKSRNQL QHAFEHALPQ IESLPLAKRC RWSLDRDPQD LL
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