| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0531 |
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| Symbol | |
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| ID | 5613214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 649009 |
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| End bp | 649533 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931376 |
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| Product | ATP-dependent protease peptidase subunit |
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| Protein accession | YP_001472271 |
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| Protein GI | 157373671 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00786303 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCACAA TCGTATCAGT TCGCCGTAAT AACCAGGTCG TAATCGCTGG AGATGGCCAA
GTATCACTTG GTAATACCGT GATGAAAGGT AACGCCAGAA AAGTTCGTCG CCTTTATCAC
AATAAAGTCC TGGCCGGTTT TGCTGGCGGC ACCGCCGATG CTTTTACCCT ATTCGAACGT
TTCGAAGCGA AATTAGAGAT GCATCAGGGG CATCTGATGA AAGCCGCCGT TGAGATGGCA
AAAGACTGGC GTAGCGATAA GATGCTACGC AAGCTTGAAG CCTTGCTTGC GGTTGCCGAT
GACACATGCT CATTAATCAT TACCGGTAAC GGAGATGTCG TCCAGCCAGA AAACGATCTT
ATCTCTATCG GCTCCGGAGG CAACTTTGCC CAATCGGCCG CTACGGCACT ACTCGAAAAT
ACTGAACTTA GCGCGTTAGA GATTGCTGAA AAGTCGCTAA CCATTGCCGG TGATATCTGT
GTGTTCACCA ACCAGTTCAA AACAATCGAA GAATTAAATT ACTGA
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| Protein sequence | MTTIVSVRRN NQVVIAGDGQ VSLGNTVMKG NARKVRRLYH NKVLAGFAGG TADAFTLFER
FEAKLEMHQG HLMKAAVEMA KDWRSDKMLR KLEALLAVAD DTCSLIITGN GDVVQPENDL
ISIGSGGNFA QSAATALLEN TELSALEIAE KSLTIAGDIC VFTNQFKTIE ELNY
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