| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0530 |
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| Symbol | hslU |
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| ID | 5613213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 647610 |
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| End bp | 648935 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931375 |
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| Product | ATP-dependent protease ATP-binding subunit HslU |
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| Protein accession | YP_001472270 |
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| Protein GI | 157373670 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
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| TIGRFAM ID | [TIGR00390] ATP-dependent protease HslVU, ATPase subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.10008 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGAAA TGACCCCACG TGAGATAGTC CATGAGTTAG ACACTCACAT TATTGGCCAA
CATGATGCGA AACGTTCGGT GGCTATCGCC CTGCGTAACC GCTGGCGTCG TATGCAACTC
GATGTCGATT TCCGTCAGGA AGTGACCCCA AAGAATATCT TAATGATAGG TCCTACCGGC
GTCGGTAAAA CAGAGATCGC CCGCCGCCTG GCTAAACTGG CAAAGGCGCC GTTTATCAAG
GTCGAAGCCA CTAAGTTCAC CGAAGTGGGC TATGTCGGCA AAGAAGTGGA ACAGATCATT
CGCGATCTTA CCGATTCTGC GATTAAGATG ACCCGTGAAG ATCAGATGAA GAAGTGCAAA
TTCAAAGCCG AAGAGGCCGC TGAAGAACGC ATTCTCGATG CACTTCTACC TAAGCCTAAA
GAGGATTGGG ACAACGAAAA GCCCGATGAT TCGGCGACTC GCCAGATCTT CCGTAAGAAG
CTTCGTGAAG GTCAACTTGA CGACAAAGAG ATCGAAATTG ACGTTGCTGC ACCTCAGGTC
GGCATCGAAA TCATGTCTCC TCCAGGCATG GAAGAGATGA CAAACCAGCT ACAAAGCATG
TTCCAGAATA TGGGGCCCGG CGACAGCAAG CGTCGTAAGA TGCCAATCAA AGAAGCTTAC
AAGCTTATGA TTGAAGAGGA AGCTGCAAAA CTCGTCAATC AAGATGACAT GAAAGAGCAG
GCTATCGAAC TGGTTGAGCA GCACGGTATC GTCTTCTTAG ATGAGATCGA TAAGATCTGT
AAGCGTGGTG AATCTTCAGG TCCGGATGTA TCCCGTGAAG GTGTACAGCG TGACCTGCTG
CCTTTAGTTG AAGGTTGCAC GGTCAACACC AAACACGGCA TGGTTAAAAC CGACCATATC
CTGTTTATCG CCTCAGGTGC ATTCCAGATG TCTAAGCCGT CAGACTTGAT CCCGGAACTA
CAGGGTCGTC TGCCCATTCG TGTCGAGCTC AGCGCCCTGA CTGCCGATGA CTTCAAGCGC
ATCTTAACCG AGCCTCATGC CTCACTCACT GAGCAACACG TTGCTATGAT GGGCACCGAA
GATGTGAAAA TTGAGTTCAC CGAAGATGGC ATCGAGAGCA TCGCTCAAGC TGCATGGCAG
GTAAACGAGC GTACCGAAAA TATCGGTGCC CGTCGTCTGC ACACAGTGAT GGAGCGTCTG
ATGGAAGATC TATCCTATGA CGCGTCTGAC AAGTCCGGTA ACACCTTCGT TATCGATGCT
GAATATGTCA GCAGCCACTT AGATGATTTA GTGCAAGACG AAGATCTAAG CCGCTTTATT
CTATAA
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| Protein sequence | MSEMTPREIV HELDTHIIGQ HDAKRSVAIA LRNRWRRMQL DVDFRQEVTP KNILMIGPTG
VGKTEIARRL AKLAKAPFIK VEATKFTEVG YVGKEVEQII RDLTDSAIKM TREDQMKKCK
FKAEEAAEER ILDALLPKPK EDWDNEKPDD SATRQIFRKK LREGQLDDKE IEIDVAAPQV
GIEIMSPPGM EEMTNQLQSM FQNMGPGDSK RRKMPIKEAY KLMIEEEAAK LVNQDDMKEQ
AIELVEQHGI VFLDEIDKIC KRGESSGPDV SREGVQRDLL PLVEGCTVNT KHGMVKTDHI
LFIASGAFQM SKPSDLIPEL QGRLPIRVEL SALTADDFKR ILTEPHASLT EQHVAMMGTE
DVKIEFTEDG IESIAQAAWQ VNERTENIGA RRLHTVMERL MEDLSYDASD KSGNTFVIDA
EYVSSHLDDL VQDEDLSRFI L
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