| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0516 |
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| Symbol | |
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| ID | 5613879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 633420 |
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| End bp | 634361 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640931362 |
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| Product | formate-dependent nitrite reductase, nrfD protein |
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| Protein accession | YP_001472257 |
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| Protein GI | 157373657 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCAT TTCACTTTGA TAGCCTTGTT TGGCATTGGC CTATCGCAAT CTACCTTTTT
TTAGCAGGTA TATCGGCCGG AGCTATTTGT TTCGCCGTAT TACTAAAGCA CTTTAAATTA
GGTAAGAGTG CTTACAAATC AAGTTTTGTT CAAGCAGCTT GTCTACTTGC ACCACTAGCC
GTATTTGCCG GTCTTGGCAT ACTAGTTCTC GATTTAACTA AGCCATTTGA TTTCTGGAAA
ATTTTAGTAT TTTACAATCC GACTTCGATT ATGTCTGTTG GAGTTGCTGT GCTAATGATT
TACCAGGTAG CCCTATTCTC ATGGTTAGCT TGCTTATTTA AAGAGCCTAT CTCCAATTGG
TGTGACCATC GATGGCCATT GATAGATAGA ATATTAAATA TATTAGATAA GCATGAGCCT
AGCATCACTG GATTGCTAGT TATGCTAGCT CTATCTTTAG GTGCTTATAC GGGCTTTTTA
CTTTCTGCAT TGACCACTTT TCCTATGCTC AACAATCCTG TACTACCTAT GTTATTTCTT
GTTTCTGGTA TTTCTTCAGG GGCTGCAGGA ACCTTGTTAG GTGGATTACT CCTCAAGGGG
AACCCTGATA GTAAAGAAGT TCATTTTATT CATCACATTG AAATACCTAT AATTTTATTC
GAACTGGTTC TGCTTTTTAC CTTCTTCATT GGGTTGATTA TATCTGGCGG ACAGAGCCAA
GCAGCGGCAC TTACGGCGCT CGGGGAAGGT TTCTGGGGAT GGGTATTCTG GGCTGGGATC
ATTGTAATAG GCTTAACACT ACCGCTCGCC TTCAATTTAT TTATGACAGC CTCTTCTAAA
CGAAAACTAT CTTATGTCGC TATTACAGCT AGTTGCAGTT TATTGGGCGT TTTACTGCTT
CGTAACTTCA TTCTTTACAC TGGTCAAATG ACTGTCGCAT AA
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| Protein sequence | MNPFHFDSLV WHWPIAIYLF LAGISAGAIC FAVLLKHFKL GKSAYKSSFV QAACLLAPLA
VFAGLGILVL DLTKPFDFWK ILVFYNPTSI MSVGVAVLMI YQVALFSWLA CLFKEPISNW
CDHRWPLIDR ILNILDKHEP SITGLLVMLA LSLGAYTGFL LSALTTFPML NNPVLPMLFL
VSGISSGAAG TLLGGLLLKG NPDSKEVHFI HHIEIPIILF ELVLLFTFFI GLIISGGQSQ
AAALTALGEG FWGWVFWAGI IVIGLTLPLA FNLFMTASSK RKLSYVAITA SCSLLGVLLL
RNFILYTGQM TVA
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